Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O17
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.83 
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    29   4.4  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    29   4.4  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   5.8  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   7.7  
Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical pr...    25   8.9  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 410 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 252
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 96  NVMDVATDDNLQYQFFPXFKWISSVQSQSSE*CPHRAHDRPARIGSYV*GDDWRLGKR*E 275
           N MD+ T+ +LQ++  P  K+   ++  ++    H    +   +GS+     WRL +R E
Sbjct: 388 NCMDIPTNGSLQFEKPPFDKFFIGIKMLNNMTTNHTNLPKIDNVGSFNVNGHWRLIRRRE 447

Query: 276 RHQEK 290
           + + +
Sbjct: 448 KFERQ 452


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 698 VLFTKVPRSLVNSFLLMAALTFHGVVL 778
           ++FT +  S+VNS+L+ + LT  G++L
Sbjct: 94  IIFTVISTSVVNSWLIFSILTITGLIL 120


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 698 VLFTKVPRSLVNSFLLMAALTFHGVVL 778
           ++FT +  S+VNS+L+ + LT  G++L
Sbjct: 94  IIFTVISTSVVNSWLIFSILTITGLIL 120


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 414 NSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 235
           +S  L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH
Sbjct: 261 SSLLLSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIH 312

Query: 234 RIR 226
           +I+
Sbjct: 313 KIK 315


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 105  DVATDDNLQYQFFPXFKWISSVQSQSS 185
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 449 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 342
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical
           protein F36D3.9 protein.
          Length = 344

 Score = 24.6 bits (51), Expect(2) = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 639 TSWRRCGRTGLLRRAPVCGSC 701
           T W +C    L+R    CGSC
Sbjct: 109 TRWPQCKSMKLIREQSNCGSC 129



 Score = 21.8 bits (44), Expect(2) = 8.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 690 CGSCCSRRCHDPW*TRSFSWLRLRSM 767
           CG  C   C   +  R+F W   R +
Sbjct: 163 CGMSCGEGCDGGFPYRAFQWWARRGV 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,668
Number of Sequences: 27780
Number of extensions: 456094
Number of successful extensions: 1314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)