Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O16
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   4.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   7.2  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.5  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 320 QDSTYAINGPNEDRDCFNAFFANKTVTSKRSYK 222
           +DS    NGP  D   +  FF  KT   +R  K
Sbjct: 205 EDSEDESNGPQADSIMYEDFFGPKTAAGRRELK 237


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 641 SRDEAAAPELTRLQTRRAVPPVNCWTRNDTPGEKRAPMGADSXCL 775
           +++EA  P+L +    +   PV  +    TPGEK+     DS  L
Sbjct: 52  AKEEARKPKLDK--KAKIASPVAEYVEKTTPGEKKVLQDLDSPAL 94


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 34  SSTDVCLIDVRKRIPHSKSLKLFQCGFSSAL*LIKKKNVNSVNQKCTF 177
           S   +  I    R+    S+ L  C FS +L  ++KK  NSV  K +F
Sbjct: 28  SLVSIQYIPFSNRLYEIISIALNPCNFSKSLFWLRKKIKNSVLLKTSF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,449
Number of Sequences: 5004
Number of extensions: 57082
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)