Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_O16
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0985 + 25052753-25053691 34 0.15
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 1.4
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 1.4
03_05_1031 + 29857759-29857905,29858118-29858124,29858568-29858725 30 2.5
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 29 5.7
12_02_1062 - 25763269-25764141 28 7.5
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 28 7.5
07_03_0743 - 21118619-21119071 28 7.5
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 28 9.9
>12_02_0985 + 25052753-25053691
Length = 312
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -2
Query: 703 WW---NCSSGLETRQLGCRCLVS*TCAGAHVRTGQCGPRHGCVCLRAAVG 563
WW NC+ G L RC + TC TG G H C CL VG
Sbjct: 243 WWVNGNCTHGGGGGDLAWRCAPNATCLNVQTPTGGWG--HQCKCLHGMVG 290
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 430 NDLLSECKRNTSLRTSCKRLCPYELNKGLLSPTDAS 323
N + SE +TSL TS K CP +SP DAS
Sbjct: 178 NRIYSETNIDTSLATSLKSNCPNTTGDNNISPLDAS 213
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 430 NDLLSECKRNTSLRTSCKRLCPYELNKGLLSPTDAS 323
N + SE +TSL TS K CP +SP DAS
Sbjct: 178 NRIYSETNIDTSLATSLKSNCPNTTGDNNISPLDAS 213
>03_05_1031 + 29857759-29857905,29858118-29858124,29858568-29858725
Length = 103
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 503 DIRLHSCRFQGFVLVAVAMATCDLERPSLRVQA 405
++ + +C + G + V + TCDLE P + + A
Sbjct: 57 ELEMQTCHYTGQITVQDSRKTCDLEMPRINITA 89
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 367 PYELNKGLLSPTDASPKIQLTP*TDLTKIATALTRFSQTKQ 245
P+ +GLL P ASP + TP + +K ++ FS Q
Sbjct: 855 PFTQLEGLLGPASASPVVSETPASSTSKTPDLMSIFSDDVQ 895
>12_02_1062 - 25763269-25764141
Length = 290
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 703 WW-NCSSGLETRQLGCRCLVS*TCAGAHVRTGQCGPRHGCVCLRAAVGMAA 554
WW N S G LG RC + TC +G G R C+ A G AA
Sbjct: 219 WWVNGSCGGGVDDLG-RCAANATCIPMQTPSGNWGHRCECLPWMAGDGFAA 268
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 564 PTAARRHTQPWRGPHWPVLTWAPAHVQETRQRHPS*RVSRPE 689
P R H P R P V P H Q++ RH S PE
Sbjct: 452 PMHGRNHVDPLRNPTPLVDRHIPGHAQDSFSRHVEVERSTPE 493
>07_03_0743 - 21118619-21119071
Length = 150
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 686 GSGDASARVPLPRLLNMRRSPRKNRPVRPSPW 591
G+G SA P P +L M R RK RP + W
Sbjct: 65 GAGSCSASCPRPAVLGMARR-RKARPAASARW 95
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 665 RVPLPRLLNMRRSPRKNRPVRPSPWLCVSACGGRYGGSSEPS 540
R P+P LL R++P RP+ S C+ C R+ SS S
Sbjct: 37 RAPVPGLLPERQAPEGRRPLAAS--RCLPTCLRRHRRSSRRS 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,081,039
Number of Sequences: 37544
Number of extensions: 494842
Number of successful extensions: 1742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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