Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O14
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    54   2e-08
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   4.3  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   7.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   7.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   7.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   10.0 

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
 Frame = +3

Query: 258 YCEYIIYFIVIAQCNWPVTNDTHKSIQSLKALMISDTHLLG------PRRGHWLDKMRRE 419
           Y E II+     +C+W        +   ++  +++D  L+       PR    + K   +
Sbjct: 18  YLEKIIHTRPHKKCDWRSWEQWESTGNPVRIALVADPQLVDDLTYDYPRPLIGIVKWISD 77

Query: 420 WQMHQAFQTIMMMLSPDVVFVLGDLFDEGEWTNNKEFQEYVERFYRLFMVPPHVN-MYVV 596
             + + ++ +   L PD+ F++GDL D G     +EF++   R   + + P   N + + 
Sbjct: 78  QFLRRHWRYLHKSLKPDITFIMGDLMDTGREFATEEFKKDYFRMMNV-LDPKFTNKLEIY 136

Query: 597 AGNHDIGFHNYIRKGAIQRFYKLLNTSS 680
            GNHDIGF N+     IQRF  L   +S
Sbjct: 137 PGNHDIGFGNHAIVKDIQRFESLFGPTS 164


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 786 VVYHSXLHYTXDRNLPPLPLNSKV 715
           +VY   L  T + N+PP+P  SK+
Sbjct: 71  IVYVENLQTTTEANIPPIPRKSKL 94


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 781 ISFRASLHNXQESPSIAIEFKSTK*MSFKVTNSTDDVLRS 662
           ++ + SL +  E PS  I F  T    F +   TDD+ R+
Sbjct: 504 MAIKESLQSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRT 543


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 642 LPFLCNYEIQYHDSLQ-QHTC 583
           L  L N++++YHDSLQ Q  C
Sbjct: 582 LKILKNFQLRYHDSLQLQEKC 602


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +3

Query: 495  FDEGEWTNNKEFQEYVERFYRLFMVPPHVNMYVVAGNHDIGFHNYIRKGA-IQRFYKLLN 671
            FD G    + +FQ   ER  +++ +     M  + G+ +  +    ++ + ++   + LN
Sbjct: 1223 FDRG----HSDFQFDTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKELAQRLN 1278

Query: 672  TSSVEFVTLKDIHFVLLNSMAMEGDSCXLCSEARNDI 782
            T +   V L+DIH  L     + G     C+E  +D+
Sbjct: 1279 TFNAHVVLLQDIHGCLTAWARLTGLLVDDCNEVISDV 1315


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 624 NYIRKGAIQRFYKLLNTSSVEFVTLKDIHFVLLNSMA 734
           NY++K  +Q+F KLLN   V+ + L+ +     N+ A
Sbjct: 25  NYLKKNDLQKFRKLLN--QVQQLDLRSLWLKYRNAKA 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,209
Number of Sequences: 5004
Number of extensions: 69279
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)