Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O14
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851...    69   3e-12
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635...    46   5e-05
08_02_0190 - 14037655-14038044,14038053-14038436                       31   1.5  
01_05_0091 + 18048595-18050559                                         29   6.0  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           28   7.9  

>03_03_0254 +
           15884149-15884295,15884765-15884803,15884958-15885136,
           15887175-15887310,15887769-15887865,15888448-15888534,
           15888621-15888721,15888905-15888939,15889520-15889577,
           15889650-15889724,15890048-15890135,15890155-15890308,
           15890395-15890638
          Length = 479

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 49/200 (24%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
 Frame = +3

Query: 198 MRRVTKNVXXXXXXXXXXXXYCEYIIYFIVIAQCNWPVTNDTHKSIQS----LKALMISD 365
           M+ VT+              Y E   Y+     C+WP ++ +  S  S    +K  +++D
Sbjct: 1   MQSVTRLTLLLCAAWAAALLYGEMGAYWAARLSCSWPSSSSSPPSSLSPNNHVKIAVVAD 60

Query: 366 THLLG------PRRGHWLD--KMRREWQMHQAFQTIMMMLSPDVVFVLGDLFDEGEWTNN 521
             L+       P     L   +   +  M ++FQ++++   PD++  LGD FD G + +N
Sbjct: 61  PQLMDSTSLGLPPSSIALQAAEFYTDLNMRRSFQSVVLPFKPDMLLFLGDHFDGGPYMSN 120

Query: 522 KEFQEYVERFYRLF-----MVPPHVNMYVVAGNHDIGFHNY--IRKGAIQRFYKLLNTSS 680
           +E+ E + RF  +F     +  P++ +Y ++GNHDIG+  +  I    I R+ K   + +
Sbjct: 121 EEWHESLSRFKHIFSMNEHITNPNIPIYYLSGNHDIGYSAFHKIHPEVISRYEKEFGSRN 180

Query: 681 VEFVTLKDIHFVLLNSMAME 740
            +F+  K + FV++++  ++
Sbjct: 181 YQFLAGK-VDFVVVDAQTLD 199


>06_01_0837 -
           6355315-6355342,6356185-6356361,6356579-6356662,
           6356989-6357542,6358086-6358322
          Length = 359

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
 Frame = +3

Query: 342 LKALMISDTHLLGPRRGHWLDKMRREWQMHQAFQTIMMMLSPDVVFVLGDLFDEGEWTNN 521
           L+ +M+SD  LLG     + D+  R   M + F   +  L PD++ VLGD+   G     
Sbjct: 47  LRVMMVSDLMLLGSD-ATYADRFFRNHVMSKLFAKSIETLRPDMIVVLGDISAMGFQLKE 105

Query: 522 KEFQEYVERFYRLFMVPPHVNMYVVAGNHDIGFHNYIRKGAIQRFYKL---LNTSSVEFV 692
            ++ + +++F  +      + +++  G+ D+G    +    +    K    L++S     
Sbjct: 106 SKWIDVIDQFKGILGQYSDLPLHIALGDKDVGGCANLDDSFVHHMAKHLPGLDSSGCGTF 165

Query: 693 TLKDIHFVLLNSMAM 737
            + ++ FV LNS+A+
Sbjct: 166 EIGNVSFVSLNSVAL 180


>08_02_0190 - 14037655-14038044,14038053-14038436
          Length = 257

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 496 LMKENGQIIKSFKSMLNVSIDYLWYHPT*TC 588
           L++ENG+I +  +S+ ++ + YL YH   TC
Sbjct: 106 LIRENGRITRQCQSLPSIHVIYLKYHRNVTC 136


>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 725 IQKYKMNVFQSDKFN**RVKELVKSLDSSLSYVI 624
           IQ+ K + F  DK +  RVKELVK++ + LS+ I
Sbjct: 348 IQELKESKFDDDKHS--RVKELVKNMQTVLSHEI 379


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 423 QMHQAFQTIMMMLSPDVVFVLGDLFDEGEWTNNKEFQEYVER 548
           +MH + Q + + +S  V  +LGD+ D  + T    F+   ER
Sbjct: 584 RMHTSLQDLQLFMSRAVEVLLGDIHDRSDPTLLSHFEPVQER 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,033,155
Number of Sequences: 37544
Number of extensions: 380541
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)