Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O14
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 221 YIFCDSSHDDLDIVVLLPKCEEYRVNVF 138
           +I CDSS  + D++  LP   EY  +++
Sbjct: 64  HINCDSSKFEEDLMNKLPTTPEYNNHLY 91


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 522 YYLSILLHQINHLKQIQRQ 466
           YY  I+ H +NH K ++ Q
Sbjct: 230 YYSQIVSHVVNHEKALREQ 248


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 458 HHHYSLKCLMHLPLASHFIQP--MPSSWSQ*MGV*YHKGFQ 342
           HHH+  + L HL    H+ QP  +  S+S  +   Y  G Q
Sbjct: 353 HHHHQTQSLQHL----HYRQPPTLSESYSSYVNSMYASGAQ 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 270 IIYFIVIAQCNWPVTN 317
           ++Y  VI +C  PVTN
Sbjct: 705 VLYGFVIIECQEPVTN 720


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 702 DIHFVLLNSMAMEGDSCXLCSEARNDIL 785
           D  F+ +       DSC LC ++ N ++
Sbjct: 339 DTQFLQVCRSRRHSDSCCLCLDSMNAVI 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,320
Number of Sequences: 438
Number of extensions: 4884
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)