Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O12
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.9  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    22   6.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 170 SKQRRFSCFIRWTCMNSSNQLENHKNTLHSSKSFLC 63
           S+ R F+C +        + L+NH+ T    K F C
Sbjct: 130 SRDRPFTCEVCNRSFGYKHVLQNHERTHTGEKPFEC 165


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 305 FSCLCPSHCLGLFME 261
           FSC CPS  LG   E
Sbjct: 244 FSCSCPSGTLGYICE 258


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 226 CIIMMQIRLRHGSMNK 273
           C+I  Q+R+ HG ++K
Sbjct: 74  CVISRQLRVSHGCVSK 89


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 121 LRISWKIIKTHYTVVNLF 68
           +R+ WK  +  Y V N+F
Sbjct: 59  IRLEWKSFRFVYAVYNIF 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,461
Number of Sequences: 336
Number of extensions: 4605
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)