Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_O12
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 50 5e-07
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.086
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.80
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 4.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.7
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 26 7.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.9
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 9.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.9
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.9
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 49.6 bits (113), Expect = 5e-07
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 14/229 (6%)
Frame = +3
Query: 165 LAKLRKKTGYTIANCKKALEMHN-NDADKAETWLHEQAQAMGWAKATKLAGRTALQGLV- 338
+ KLR +T ++ K+++E + + A L ++ G A K RTA +G +
Sbjct: 37 IKKLRSETNASMDLVKQSVEEAGVGNLELAREILKKKIVQRGGKLAEKSKNRTAKEGWII 96
Query: 339 -AVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA---HTKLQAKGPITKME 506
+ D + E+NCE+DFVA+ FQ + A + H+ + +
Sbjct: 97 QCISEDGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEI 156
Query: 507 LDSEQLGTLHAEGGKK-------LSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYT 665
L + + + E +K L E + GE ++R C A I ++
Sbjct: 157 LKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFS 216
Query: 666 HPAPXXXXXXXXGKYGALLAYKQP-NDVXDIGRQLCQHIVGCAPTKIGD 809
H A G+ G+++ + + Q+ + IV P+ +
Sbjct: 217 HGAKQSSPLQQLGRIGSMVQINSDLSTRKGLSNQIAKEIVAQDPSSTSE 265
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 32.3 bits (70), Expect = 0.086
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 394 SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLVAFAHPIAWACSWSHV-SALSASLLCIS 221
S +L+ST W F++N+ + PW LP+ + H + S + + L LLCIS
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCIS 4007
Query: 220 NAFL 209
+ +
Sbjct: 4008 RSIV 4011
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.80
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Frame = -2
Query: 619 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 440
S+ S+ S + I S++ S F S + PS S+SSSI + S + + I+
Sbjct: 581 SSSTSSPSSTSLSISSSSTSSTFSSASTSS-PS-SISSSISSSSTILSSPTPSTSSLMIS 638
Query: 439 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIAWA---- 272
+SSII + S L++ + S+ + S++ ++ ++L+ + P+A +
Sbjct: 639 SSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSP 698
Query: 271 --CSWSHVSALSASLLCISNAFLQL 203
S S VS SASL I+++ L L
Sbjct: 699 IPSSSSLVSTYSASLSNITHSSLSL 723
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = -2
Query: 619 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 440
S+ LST+ P+ S++ S + S+ + S S SSS + + S + + I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 439 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 332
+SS + S +T S SS+ + F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 706 NMGPCSLTNSQTTXKTSAGNYASTSSAV 789
N+G CSL T S +YA TSS++
Sbjct: 427 NIGRCSLKKLSTIRSCSTNSYAFTSSSL 454
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 189 GYTIANCKKALEMHNNDADKAETWL 263
G+T+A +K L NN+ ++A W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.7
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = -2
Query: 646 TSSLFAFQHSARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV 467
+SS +A S S + S N + + P S+ S + SSS+ + SL
Sbjct: 71 SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130
Query: 466 *ANL-NEAIAASSIIF*NLSFLATKSVSQLSST 371
+++ + ++A+SSI +L+ +T S S SS+
Sbjct: 131 SSSITSSSLASSSITSSSLASSSTTSSSLASSS 163
Score = 25.4 bits (53), Expect = 9.9
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = -2
Query: 649 LTSSLFAFQHSARLSTAFSPT-EPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACS 473
LTSS S +T+ SPT + S++ + + S + S SL+SS LA S
Sbjct: 85 LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASS--STTSSSLASSSITSSSLASS 142
Query: 472 LV*ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPW--FLSNLTATN 332
+ + ++A+SS +L+ +T S + + T + LS+ A+N
Sbjct: 143 SI---TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 670 QRLAVLVIIPLENMGPC--SLTNSQTTXKT 753
+R+ LV+IP EN+GP ++ N +T T
Sbjct: 96 ERIRSLVVIPSENLGPLHEAIVNLHSTYMT 125
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 652 SQVIPIQRLAVLVIIPLENMGPCSLTNSQTTXKTSAGNY 768
S+++P + + +++ LEN+ LT+S + GNY
Sbjct: 468 SKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNY 506
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 129 TSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNND 239
T P Y ES AK+ K+ G+ + L H+N+
Sbjct: 301 TFPFYHLIESEGFAKMAKRLGHGVYGLPYYLVFHHNE 337
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 SPAYKAAE-SSLLAKLRKKTGYTIANCKKALEMHNNDADKAETW 260
+PAY+ E ++ K +K+TG N K + D A+ W
Sbjct: 345 NPAYEKWEVREVVGKKKKRTGILAINNKSIVLTFTKTMDAAQVW 388
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 126 HTSPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMG 287
H + +S L +R +A K +E A KA+TWL +A+G
Sbjct: 741 HKDECFPNTDSDLTVLVRYDDNALLAAYSKVVER----AHKADTWLENYKEALG 790
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 354 KNHGALVELNCETDFVAKNDKFQKMIEDAA 443
K +G +V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,377
Number of Sequences: 5004
Number of extensions: 73629
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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