Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_O12
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 149 2e-36
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 149 2e-36
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 32 0.58
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 3.1
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 3.1
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 3.1
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 3.1
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 29 5.4
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 29 5.4
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 149 bits (362), Expect = 2e-36
Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%)
Frame = +3
Query: 144 KAAESSLLAKLRKKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 320
K ++ +L+A LRKKTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 321 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 500
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 501 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 680
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 681 XXXXXXXGKYGALLAYKQ--PNDV--XDIGRQLCQHIVGCAPTKIGD 809
G++ +L+A Q P + + Q+CQHI+G +P +G+
Sbjct: 199 GTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGE 245
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 149 bits (362), Expect = 2e-36
Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%)
Frame = +3
Query: 144 KAAESSLLAKLRKKTGYTIANCKKAL-EMHNNDADKAETWLHEQAQAMGWAKATKLAGRT 320
K ++ +L+A LRKKTGY+ NC+KAL + ND D A WL E A GWAKA KL R
Sbjct: 24 KVSKEALMA-LRKKTGYSYVNCRKALIQFGENDMDSAVKWLKEAAAKEGWAKAAKLGTRV 82
Query: 321 ALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITK 500
GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A K Q+ +K
Sbjct: 83 TSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLAKAKPQSISSGSK 140
Query: 501 MELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPX 680
++ + LG L GK + E+L+L IG +GEN +RR + +KA E + G +HP
Sbjct: 141 LQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEGTTLFGASHP-KD 198
Query: 681 XXXXXXXGKYGALLAYKQ--PNDV--XDIGRQLCQHIVGCAPTKIGD 809
G++ +L+A Q P + + Q+CQHI+G +P +G+
Sbjct: 199 GTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGE 245
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 382 LSSTRAPWFLSNLTATNPWRAVLPANLVAFAHPIA----WACSWSHVSALSASLLCISNA 215
L T A WF+ + T+ WR + A L+ F H I W C ++H++ ++C
Sbjct: 148 LERTFASWFILDYERTSRWR-IFRA-LLIFQHGIIFVMHWFCFFNHINFFLGFIVCF--L 203
Query: 214 FLQLAIV 194
F+ LA+V
Sbjct: 204 FIILAVV 210
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 29.5 bits (63), Expect = 3.1
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 171 KLRKKTGYTIANCKKALEMHNND-ADKAETWLHEQAQAMGWAKA-TKLAGRTALQGLVAV 344
+LRK+ G +N +KA M +ND D+ T +++ G KA KL G L+ +
Sbjct: 2249 ELRKELGELESNVEKASAMSSNDIGDQLATLDSLKSRFGGVDKALEKLKG--ILEATEEL 2306
Query: 345 KFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQL 524
+ D + A ++ ET K D+ ++ IE+ K A Q +G + +LD E +
Sbjct: 2307 EVDATNRAEIQEQLETT-QKKADELERKIENV-----KKAALNAQNEGLELEKKLD-ELI 2359
Query: 525 GTLH-AEGGKKLSEILA 572
GT++ AE +L+ +A
Sbjct: 2360 GTVNSAENELELAAPIA 2376
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 619 SAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTTXKTSAGNYASTSSAVHPQ 798
S+G T+R + S + ++ + ++ + G S T S TT KTS + ++TS A P
Sbjct: 486 SSGSNTSRKTISDLQMRKQQYRMRLLASQAAG--STTRSTTTLKTSTTSVSTTSEATSPS 543
Query: 799 KS 804
K+
Sbjct: 544 KT 545
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 401 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 228
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 401 HKISFTVEFHQSTMVLVKLNSYQPLEGRPAS*FSCLCPSHCLGLFMEPCLSLICIIIM 228
H+ S ++ T++ V + + L+ ++ + +CPS F PC+ +IC ++M
Sbjct: 507 HEYSHVFGTYECTLLDVTIGVFMVLQSIASATYH-ICPSDVAFQFDTPCIQVICGLLM 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,894
Number of Sequences: 27780
Number of extensions: 429985
Number of successful extensions: 1149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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