Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O11
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   166   2e-42
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   166   2e-42
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    79   4e-16
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    79   4e-16
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    79   4e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    48   5e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    35   0.005
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    24   9.7  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    24   9.7  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  166 bits (403), Expect = 2e-42
 Identities = 76/84 (90%), Positives = 77/84 (91%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKC 194
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKC
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKC 99

Query: 195 YARLHPRATNCRKTKCGHTNNLRP 266
           YARL PRATNCRK KCGHTN LRP
Sbjct: 100 YARLPPRATNCRKKKCGHTNQLRP 123


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  166 bits (403), Expect = 2e-42
 Identities = 76/84 (90%), Positives = 77/84 (91%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKC 194
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKC
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKC 99

Query: 195 YARLHPRATNCRKTKCGHTNNLRP 266
           YARL PRATNCRK KCGHTN LRP
Sbjct: 100 YARLPPRATNCRKKKCGHTNQLRP 123


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 116 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 192 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 268 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 125
           QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 40  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 48.4 bits (110), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 128
           QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct: 40  QQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +3

Query: 15  QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 116
           +QRLI+AG+ L+D  +L  Y IQ   ++HLV  L
Sbjct: 43  RQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  LFQTITSRKNPHFTW 105
           LFQT  + KNPH  W
Sbjct: 117 LFQTDMNEKNPHDLW 131


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  DGRTLSDYNIQKESTLHLVLRLR 119
           DG TL++ N       HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,835
Number of Sequences: 5004
Number of extensions: 28349
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)