Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O10
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0464 + 6006021-6006082,6006249-6006519                           29   2.3  
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156     28   6.9  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    28   6.9  
12_02_0046 + 12830974-12832386                                         27   9.1  
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444...    27   9.1  

>04_01_0464 + 6006021-6006082,6006249-6006519
          Length = 110

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 563 TSVGDNGSGAIRSVGDHGGGYVTNQ 489
           + VG +G G+ R  GDHG G  T Q
Sbjct: 40  SGVGGDGDGSERGTGDHGAGSGTEQ 64


>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
          Length = 405

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 611 GMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 501
           G S HW A  C  S   + G  G GA    G  GGGY
Sbjct: 116 GDSCHW-ARECPQSVPATGGGGGGGAFGGSGGGGGGY 151


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 508 PPWSPTLRMAPLPLSPTLVMP 570
           PP S  ++MAPLP  PTL  P
Sbjct: 148 PPGSMPMQMAPLPRPPTLPPP 168


>12_02_0046 + 12830974-12832386
          Length = 470

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 PPPWSPTLRMAPLPLSPTLVMPELTQVMA 591
           P P  P+LR AP  ++P   +P +TQ  A
Sbjct: 243 PQPAPPSLRTAPAAVAPPRQVPVITQQQA 271


>03_05_0902 +
           28643395-28643708,28643830-28643921,28644342-28644443,
           28645135-28645185,28645267-28645328,28645664-28645754,
           28645911-28645975,28646053-28646247,28646346-28646465,
           28646630-28646700,28646839-28647064,28647474-28647524,
           28647629-28647857,28648140-28648279,28648527-28648652
          Length = 644

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 505 PPPWSPTLRMAPLPLSPTLVM-PELTQVM 588
           P PW P L MA  PL    VM PE  +V+
Sbjct: 61  PKPWRPDLDMALTPLRFAFVMHPEFREVV 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,204,187
Number of Sequences: 37544
Number of extensions: 74086
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)