Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O08
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0884 - 21283761-21283877,21283965-21284016,21284119-212841...    31   1.4  
06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616...    30   1.9  
05_06_0143 + 25970745-25970962,25971053-25971140,25971588-259717...    29   4.3  
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     29   4.3  
10_08_0844 - 20963774-20963792,20964111-20964256,20964787-209649...    29   5.7  
08_02_0254 - 14879724-14880635                                         28   7.5  
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047...    28   7.5  
02_01_0648 + 4828668-4829585,4829677-4830330                           28   9.9  

>10_08_0884 -
           21283761-21283877,21283965-21284016,21284119-21284187,
           21284475-21284587,21284694-21284753,21284834-21285136
          Length = 237

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
 Frame = -3

Query: 740 ATRGIEP*TLLICGADVRFRLHPRRLLLAPQ-----RCEVPYCK*PRDGCGPCSE--QAL 582
           A + +EP  LL  GAD       RR  L PQ     R        P +G G   E   AL
Sbjct: 3   AAKPVEPLPLLRAGADTAAAAALRRFQLPPQPPRSVRANAIRASPPSNGAGSPDELPAAL 62

Query: 581 RPRALSRTSLRGGCGMSSPLSL 516
            P A  R   R GCG S  + L
Sbjct: 63  LPNAARR---RDGCGFSLGVDL 81


>06_01_0815 +
           6166861-6166953,6167074-6167173,6168569-6168639,
           6169873-6170064,6170168-6170290
          Length = 192

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 680 LHPRRLLLAPQRCEVPYCK*PRDGCGPCSEQALRP 576
           LH R++ +AP+R  VP  K PR G G      +RP
Sbjct: 146 LHGRQIKVAPKRTNVPGMKQPRGGRGFGGHPYMRP 180


>05_06_0143 +
           25970745-25970962,25971053-25971140,25971588-25971732,
           25972014-25972101,25972179-25972381,25972774-25972913
          Length = 293

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 334 EFRAQSIAHKRPIIVQQSNNTPHSFHLHTISLFT-QTFRALVSTELV 197
           EF+   +AHKR   VQQ    PH  +   + +F+    R+LV+  LV
Sbjct: 132 EFKRSVVAHKRRARVQQDPGVPHIPYDVLVHIFSFLDMRSLVAAGLV 178


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 592 SEQGPHPSLGYLQYGTSHLWGANNSRRGWSRKRTSAPQMSN-VHGSMP 732
           SE G HP+L Y+   ++ L+G  + R G   K T+    +N + G +P
Sbjct: 443 SEMGLHPNLVYIDMSSNKLYGQLSHRWGECAKLTTLRASNNRITGVIP 490


>10_08_0844 -
           20963774-20963792,20964111-20964256,20964787-20964962,
           20965061-20965216,20965287-20967102
          Length = 770

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 564 AERPRPQSLLGTRPASISRLLAVRDFTPLGCQQQPPWVESETDIG 698
           A RP P+ L  +R    +RL A R F P     +PP    ++  G
Sbjct: 17  ASRPPPRLLPPSRRPPAARLAATRRFRPPTADDEPPEAAEDSSHG 61


>08_02_0254 - 14879724-14880635
          Length = 303

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 38  PHSTATRYAVAITTTINNK*KLGFQKLYKLFI 133
           P+ +  +YAV +  T+  +  L ++KLY++ +
Sbjct: 79  PNGSLDKYAVGVVDTVQGEKSLSWEKLYEILV 110


>03_05_0952 +
           29103879-29103983,29104103-29104600,29104693-29104794,
           29105552-29105898,29105967-29106153,29106242-29106417,
           29106976-29107065,29107066-29107322,29107593-29107687,
           29107801-29107920,29108111-29108230,29108410-29108508,
           29108588-29108689,29108884-29109111
          Length = 841

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 670 RGWSRKRTSAPQMSNVHGSMPRVALVLRSRRXWPVAPQSC 789
           RG  RK TSAP+ +N        A++ RSR     +P+ C
Sbjct: 221 RGRKRKATSAPKYNNKKAKKAVAAMLTRSRE--DCSPEDC 258


>02_01_0648 + 4828668-4829585,4829677-4830330
          Length = 523

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 683 RLHPRRLLLAPQRCEVP 633
           RLHP   LLAP+RC+ P
Sbjct: 375 RLHPPAPLLAPRRCDSP 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,115
Number of Sequences: 37544
Number of extensions: 350118
Number of successful extensions: 962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)