Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O08
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.3  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.6  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 611 GCGPCSEQALRPRALSRTSLRGGCGMSSP 525
           G  PC     R ++L+   LRG C   SP
Sbjct: 57  GEAPCDPVGRRLKSLAPLVLRGACPQCSP 85


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 611 GCGPCSEQALRPRALSRTSLRGGCGMSSP 525
           G  PC     R ++L+   LRG C   SP
Sbjct: 57  GEAPCDPVGRRLKSLAPLVLRGACPQCSP 85


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 562 LLSARGRRACSEQGPHPS-LGYL 627
           L SA GR AC   G +PS  G+L
Sbjct: 290 LSSALGRSACHSPGVYPSTAGFL 312


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 465 YTRGHHFEINHRLH 424
           +TR HH + + RLH
Sbjct: 19  FTRDHHLKTHMRLH 32


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 93  NKNWDFKNYTNYLLINCFGVYCN 161
           N N++  NY N    NC  +Y N
Sbjct: 335 NNNYNNNNYNNNYNNNCKKLYYN 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,813
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)