Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O04
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    31   0.81 
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    29   3.3  
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    29   4.3  
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124...    28   7.6  
05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863           28   7.6  

>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 221 CILEKGQCTAEGKELKSHIKEALETNCAKCTKAQKGGTEKM--IGHLINH-EAEFWEELK 391
           C L +G+   +G  L    +E L  N   C    + G   M   G L  H EA F  E  
Sbjct: 60  CPLCRGE--VKGYTLVEPAREQLNQNKRSC---MQDGCSYMGSYGELCKHMEATFIPEFT 114

Query: 392 AKYDPTNEFTKKYETELKRVTA*IPLKKANSSISCNEI 505
           A+YD  NEFT   E   + + A +  +  + ++  NE+
Sbjct: 115 ARYDLCNEFTNGAEGFFEELMASVWHEGPHGAMQINEM 152


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 228 SKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS*RP 395
           S R + P  A+ L    R PS  + L  P+R      R + T ST   N  R   P
Sbjct: 187 SWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTPALNRTRGPSP 242


>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 TSLLQNIYNTNYIFS*AL*KKNVC 537
           +S+  N+Y  NY+    L KKNVC
Sbjct: 508 SSMYSNVYRINYLLDMGLSKKNVC 531


>09_01_0087 +
           1245890-1246565,1247409-1247484,1247774-1247893,
           1248927-1249002,1250767-1250835,1251019-1251099,
           1251298-1251369,1251600-1251692,1251904-1252083,
           1252558-1252641,1252729-1252872,1253089-1253178,
           1255982-1256064,1256140-1256421,1256722-1256959,
           1258307-1258957
          Length = 1004

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -3

Query: 144 CXRASEG--HSRQGKQANNNG 88
           C RA+EG  HS+ GK+ N NG
Sbjct: 426 CSRATEGVKHSKYGKKTNENG 446


>05_01_0506 - 4224789-4225376,4225387-4225429,4225700-4225863
          Length = 264

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 406 GIVFGLQLLPEFG--FVVDEVTNHLFGSTLLR-FGAFSAVGLEGFLDVRFKFLAFCG 245
           G+V GL+LLP  G   +V     HL GS  L+ F   +AVG +G  DV ++   F G
Sbjct: 105 GVVHGLRLLPREGASCMVSAGDWHLCGSHALKGFWMVAAVGSDG--DVAWEGQRFFG 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,112
Number of Sequences: 37544
Number of extensions: 357520
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)