Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O03
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.85 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.85 
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.85 
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    28   1.5  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    28   1.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   4.5  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   4.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   6.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   6.0  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 584 VDSASVTAAFELSLQFRENSLGGLVC 507
           + S +VT A ++    REN+L GLVC
Sbjct: 721 IRSLAVTTALKMLCSIRENNLDGLVC 746


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 555 ECCGNTGAINYGQFTLPESCCVXKSILSTFAGNNCTVDAANPGC 686
           +C G+     YGQ      C    S++S  AG N T+  A   C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 284 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLFAGDHH 400
           L SRR  N + +V    WS+  E +H +  RNLF  + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 346 RIAPQHPKNAITNITAPTTMKIHGPTARWVFSKXLTMVQFIRND 215
           RI P  P N + NIT P+T+  HG     V     TM  F +ND
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHGAALMEV-----TMTGFAQND 211


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 467 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 378
           +H+ +L D LA     D D  L  D+H QKD
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = -1

Query: 472 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 293
           +PS+ LS   +  +   +     T++  S K    T        A   P+N  T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376

Query: 292 TMKIHGP-TARWVF--SKXLTMVQFIRNDTPIPTSSXPRSA 179
            +    P T+  V   S  +T    +   TPI +SS   S+
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSS 417


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 453 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 563
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 425 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 288
           E+ +    N + Q+     DDH     +    SQE  HEH    D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -3

Query: 395 DHQQKDCVRDDHAVTLAYRSTASQER 318
           D   KD V DD  VTL    TA QER
Sbjct: 44  DFLTKDVVVDDKLVTLQLWDTAGQER 69


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
 Frame = -1

Query: 418 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 248
           L   C    + K +A +T  Q LSR+   H KN +     P    I  P++R    V+  
Sbjct: 95  LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153

Query: 247 XLTMVQFIRNDTPIPTSSXPRSAXTRLKKNSTYFT 143
              M ++ R+  P      P S    L   + Y +
Sbjct: 154 DFGMAKYYRD--PKTKQHIPYSERKSLSGTARYMS 186


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 434 GEEEDADHHLHNDDHQQKDCVRDDH 360
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,770
Number of Sequences: 5004
Number of extensions: 42845
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)