Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_O01
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 200 9e-52
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 190 5e-49
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 189 1e-48
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 189 1e-48
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 28 4.7
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 8.2
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 27 8.2
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 8.2
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 27 8.2
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 200 bits (487), Expect = 9e-52
Identities = 87/143 (60%), Positives = 110/143 (76%)
Frame = +2
Query: 56 LLVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYM 235
+ +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPFF GL ++
Sbjct: 50 IAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLCDFL 109
Query: 236 SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKK 415
SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIHGSD E+AK
Sbjct: 110 SSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKA 169
Query: 416 EIGLWFTDKEVVGWTPANENWVY 484
EIGLWF +E+V +T E W+Y
Sbjct: 170 EIGLWFEPRELVSYTSNEEKWIY 192
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 190 bits (464), Expect = 5e-49
Identities = 84/144 (58%), Positives = 109/144 (75%)
Frame = +2
Query: 56 LLVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYM 235
+++KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGLV+Y+
Sbjct: 6 IMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYI 65
Query: 236 SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKK 415
SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV++ KK
Sbjct: 66 ISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKK 125
Query: 416 EIGLWFTDKEVVGWTPANENWVYE 487
EI LWF + + W W+YE
Sbjct: 126 EIALWFPE-GLAEWRSNLHPWIYE 148
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 189 bits (461), Expect = 1e-48
Identities = 81/144 (56%), Positives = 107/144 (74%)
Frame = +2
Query: 56 LLVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYM 235
+++KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL++Y+
Sbjct: 7 IMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLIEYI 66
Query: 236 SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKK 415
+SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS ++ K+
Sbjct: 67 TSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKR 126
Query: 416 EIGLWFTDKEVVGWTPANENWVYE 487
EI LWF + E+ W W+ E
Sbjct: 127 EIALWFKEGELCEWESVLTPWLVE 150
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 189 bits (461), Expect = 1e-48
Identities = 81/144 (56%), Positives = 109/144 (75%)
Frame = +2
Query: 56 LLVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYM 235
+++KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GLV+Y+
Sbjct: 8 IMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLVEYI 67
Query: 236 SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKK 415
SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE+A+K
Sbjct: 68 VSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVENARK 127
Query: 416 EIGLWFTDKEVVGWTPANENWVYE 487
EI LWF + + W W+YE
Sbjct: 128 EIALWFPE-GIAEWRSNQHPWIYE 150
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 294 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGRDAKSL*CCWRS--SSDGHTNFKPTSLKP 124
RP S+T + P+ +RPGK+G DA+S+ S S T +P S KP
Sbjct: 529 RPFCPCASRSNTDASLHPQTENGSRPGKRGNDAESVPGTNGSDLSQTDDTEARPCSKKP 587
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 397 AVRTMDDVTPNL-NAEITADSAGLRVSWVSCAKHLTASLHNIKAL 266
A+R+ +T L NA IT ++ G S VSC HL+ S +++ +
Sbjct: 2086 ALRSTQMITTVLPNANITPNNLGTLDSAVSCFLHLSESASSVETI 2130
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 457 PAHNFFVRKPEAYFLFSRFNAVRTMDD-VTPNLNAEITADSAGLRVSWVSCAKHLTASLH 281
P F + E + ++ RFN T+DD + P+L S GL + A +LH
Sbjct: 217 PPSGVFAKLRELHLVYVRFNGELTLDDAMLPSLEWLDIGKSRGLASLTLRLAPLTLMALH 276
Query: 280 NIKAL 266
+++ L
Sbjct: 277 DMRWL 281
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 197 PNRCSVAGEVLLMAIRISNR 138
PN+CS+ ++LL+A+RI R
Sbjct: 1388 PNKCSLLPKILLVAVRIIQR 1407
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 197 ASRPFFPGLVKYMSSGPVVP 256
ASRPF PGL++ PV+P
Sbjct: 22 ASRPFLPGLLEAALRAPVLP 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,250
Number of Sequences: 37544
Number of extensions: 324835
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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