Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N17
         (524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.31 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   3.8  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   3.8  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   3.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 108 GTARHRHEQHSESTENNGLH 49
           G    RHE+H ES+  N LH
Sbjct: 86  GDKHDRHERHFESSFGNNLH 105


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 268 RNCSCS*HTRFRMTWVSLLSFQRR*G 191
           RNCS      +R+ W+SL    ++ G
Sbjct: 217 RNCSAYIIAHYRVLWLSLSDLLQKMG 242


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 268 RNCSCS*HTRFRMTWVSLLSFQRR*G 191
           RNCS      +R+ W+SL    ++ G
Sbjct: 217 RNCSAYIIAHYRVLWLSLSDLLQKMG 242


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 268 RNCSCS*HTRFRMTWVSLLSFQRR*G 191
           RNCS      +R+ W+SL    ++ G
Sbjct: 217 RNCSAYIIAHYRVLWLSLSDLLQKMG 242


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 42  FQYEDHYFLCFRCVV 86
           FQ + H F C R +V
Sbjct: 290 FQLDAHEFACLRAIV 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,430
Number of Sequences: 336
Number of extensions: 2130
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12678017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)