Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N16
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    29   3.4  
10_08_0383 - 17424194-17425567                                         29   4.5  
02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452     29   4.5  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    28   6.0  
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888...    28   7.9  

>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -3

Query: 329 FFHLFEYLICNFVFFCSMKNFVIHILLYVY 240
           +F++F  L+C ++FF    NF++ + ++ +
Sbjct: 64  YFNIFNKLVCTYIFFPQFVNFLLLLDMFFF 93


>10_08_0383 - 17424194-17425567
          Length = 457

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 491 NLTSPPRLSTSISGSGAFSILRVTCKSAIVLINIFA 598
           N TSPP+ +    G     +L +T + A+ +IN+ A
Sbjct: 179 NETSPPKPAAGRDGGSELRLLDLTRRDAVAIINLLA 214


>02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452
          Length = 166

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 633 VKLIH*LHCHDYAKIFISTIADLQVTLNMLNAPEPEMEVES 511
           +K+IH  H H YAK+    IA +  T++ML+    ++ + +
Sbjct: 117 IKIIH-PHMHTYAKLLHWKIASISSTISMLSLSTNKLSIHA 156


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 74  HIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQLYDNLKI---RSQVDIFIESILKEHT 244
           HI+ +++ II+E + WK ++    R K     F L++ LKI   R Q+   IE   K+ +
Sbjct: 319 HIEAVTEKIIMEEEKWKKWKTENIRRKHNYVPF-LFNFLKILEERQQLKPLIEK-AKQKS 376

Query: 245 H 247
           H
Sbjct: 377 H 377


>05_03_0146 +
           8883761-8883860,8886000-8886086,8886574-8886684,
           8887021-8887121,8887208-8887258,8887347-8887496,
           8887577-8887639,8887728-8887814,8887908-8888018,
           8888097-8888387,8889372-8889815
          Length = 531

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +2

Query: 140 QKRIKKTGNTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLNIQT 319
           Q++I  T   +Q +D +   + +  + E    E    ++YES+N+ + R++    + +Q+
Sbjct: 173 QQQISTTERIYQEFDAIYNNNNMTTWSERS-SERDIKELYESKNNHFKRQVNGTTMAMQS 231

Query: 320 NE 325
           NE
Sbjct: 232 NE 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,432
Number of Sequences: 37544
Number of extensions: 262423
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)