Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N16
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical...    30   1.8  
AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    27   9.4  
U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    27   9.4  

>AL023828-21|CAA19466.1|  381|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18b protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 16  VSMWIHLNNGDNGLREF 66
           ++ WIHLN GD+G+R F
Sbjct: 268 ITKWIHLNWGDDGMRRF 284


>AL023828-20|CAA19465.1|  378|Caenorhabditis elegans Hypothetical
           protein Y17G7B.18a protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 16  VSMWIHLNNGDNGLREF 66
           ++ WIHLN GD+G+R F
Sbjct: 265 ITKWIHLNWGDDGMRRF 281


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 187 IVIQLECISSFLNSLLCLPITFPRLWFNYY*FRNCFNVFPKILSSHYLH 41
           I + L  +  F+++L C P    R  FNY        V   +L+SHY H
Sbjct: 836 IALCLAWLQPFISTLRCSPNDSRRPIFNY--IHRGIGVTAMVLASHYCH 882


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 128 YRQAQKRIKKTGNTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSS 277
           YR  + + +        YDN  I  ++ IF+E  LKE+   K+ + Q S+
Sbjct: 188 YRSLRDKTQLLKQAVATYDNNTI-FKIVIFLERTLKENIFCKIMDGQKSA 236


>U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical
           protein F02E8.2a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 252 FICVCSFKILSIKMST*LLILRLSYSWNVFPVFL 151
           FI  C F+IL  +     + + LSY+ N+FPV L
Sbjct: 263 FIIYCYFRILGTRHFL-CITVNLSYTSNIFPVTL 295


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -3

Query: 317 FEYLICNFVFFCSM-----KNFVIHILLYVYALLKYFL 219
           F + + NF+ FCS+      N V H+L+ +  L+K+ +
Sbjct: 85  FYWKLLNFISFCSLFAFHINNTVFHVLIMMMTLVKFLV 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,908
Number of Sequences: 27780
Number of extensions: 287155
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)