Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_N15
(545 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5 prot... 22 3.0
AY769607-1|AAV40983.1| 196|Tribolium castaneum heat shock cogna... 22 4.0
AY769606-1|AAV40982.1| 196|Tribolium castaneum heat shock prote... 22 4.0
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 22 4.0
U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein. 21 5.3
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 5.3
EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate 1-deca... 21 7.0
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.0
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.0
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.0
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.0
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 7.0
AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosin... 21 9.3
AM292330-1|CAL23142.2| 408|Tribolium castaneum gustatory recept... 21 9.3
AM292323-1|CAL23135.2| 587|Tribolium castaneum gustatory recept... 21 9.3
>AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5
protein.
Length = 533
Score = 22.2 bits (45), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 189 EKSGQLSRARDRLSTFCKKLRRTISKDGSKVTTVVATP 302
++ G S +D+ F +LRR K+G +A P
Sbjct: 151 DRGGSFSD-KDKFFYFVGELRRAFDKEGKNWEITMAVP 187
>AY769607-1|AAV40983.1| 196|Tribolium castaneum heat shock cognate
70 protein.
Length = 196
Score = 21.8 bits (44), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 210 RARDRLSTFCKKLRRTIS 263
RA RL T C++ +RT+S
Sbjct: 86 RALRRLRTQCERAKRTLS 103
>AY769606-1|AAV40982.1| 196|Tribolium castaneum heat shock protein
70 protein.
Length = 196
Score = 21.8 bits (44), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 210 RARDRLSTFCKKLRRTIS 263
RA RL T C++ +RT+S
Sbjct: 86 RALRRLRTQCERAKRTLS 103
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 21.8 bits (44), Expect = 4.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +2
Query: 281 DDCGSDAGAGP*PASGSELC 340
D C S GP P ELC
Sbjct: 169 DSCDSKKKKGPTPRQQEELC 188
>U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein.
Length = 470
Score = 21.4 bits (43), Expect = 5.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 222 DHEHGLIGHFSRCQV 178
D+ H L+GHF +V
Sbjct: 134 DYHHQLLGHFGATKV 148
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 21.4 bits (43), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 172 RRAGSERTQISPTGRIGAVEPSETV 98
R A + +I IG+ EPSETV
Sbjct: 962 RPATTYHIRIVAENEIGSSEPSETV 986
>EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate
1-decarboxylase protein.
Length = 540
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 216 RDRLSTFCKKLRRTISKDGSKVTTVVATPG 305
+D+L +++ + K+GS + T A G
Sbjct: 478 KDKLHKVAPRIKERMMKEGSMMVTYQAQKG 507
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 519 KRNTSVSQCCNAPXV 475
K+NT V CC P V
Sbjct: 185 KKNTIVYACCPEPYV 199
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 519 KRNTSVSQCCNAPXV 475
K+NT V CC P V
Sbjct: 185 KKNTIVYACCPEPYV 199
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 519 KRNTSVSQCCNAPXV 475
K+NT V CC P V
Sbjct: 185 KKNTIVYACCPEPYV 199
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 519 KRNTSVSQCCNAPXV 475
K+NT V CC P V
Sbjct: 185 KKNTIVYACCPEPYV 199
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 519 KRNTSVSQCCNAPXV 475
K+NT V CC P V
Sbjct: 185 KKNTIVYACCPEPYV 199
>AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosine
kinase Torso-likeprotein protein.
Length = 803
Score = 20.6 bits (41), Expect = 9.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 351 LIGNGSFGVVYQAKL 395
+IG G+FG+V +A L
Sbjct: 456 VIGEGAFGIVRRAFL 470
>AM292330-1|CAL23142.2| 408|Tribolium castaneum gustatory receptor
candidate 9 protein.
Length = 408
Score = 20.6 bits (41), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 542 VFLFATGIKEILQFHNVAMLXP 477
+F F TG+ L F N+A P
Sbjct: 89 LFFFLTGVMASLLFLNLAKRWP 110
>AM292323-1|CAL23135.2| 587|Tribolium castaneum gustatory receptor
candidate 2 protein.
Length = 587
Score = 20.6 bits (41), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 542 VFLFATGIKEILQFHNVAMLXP 477
+F F TG+ L F N+A P
Sbjct: 89 LFFFLTGVMASLLFLNLAKRWP 110
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,457
Number of Sequences: 336
Number of extensions: 2688
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -