Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N15
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                29   0.023
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.38 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   0.88 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 0.023
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 354 IGNGSFGVVYQAKLCDTGELIAIKKVLQDKRFKN--RELQIMRRXEHCNIVKL 506
           +G+G FG+VY+A     GE +A  K++Q +++ N     +     +H NIVK+
Sbjct: 73  LGSGGFGIVYKALY--KGEQVA-AKIIQTEKYSNMLNSEKHASFLKHSNIVKV 122


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -2

Query: 295 ATTVVTFEPSLLMVRRSFLQNVDRRSRARLNWPLFSVSSKRRRAGSERTQISPTGR-IGA 119
           A+TV+ F P+L +V  SF++ + R+   R+ + +        + G E T     GR +G 
Sbjct: 170 ASTVLGFFPALNIVADSFIELIRRQ---RVGYKVTGFEELAYKMGLESTCTLILGRHLGF 226

Query: 118 VEPSETVKFSKHTGLAE 68
           ++P  + + +  T LAE
Sbjct: 227 LKPDSSSELA--TRLAE 241


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 96  LTVSEGSTAPMRPVGDICVRSEPALLRLLDTEKSGQLSRARDRLSTF 236
           L VSE S   +R +  +C       L+  D  K G   +  ++L+ +
Sbjct: 16  LAVSEESINKLRKIESVCAEENGIDLKKADDVKKGIFDKNDEKLACY 62


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 432 LQDKRFKNRELQIMRRXEHCNIVKL 506
           L DK+FKN+ L ++   +   + +L
Sbjct: 43  LMDKQFKNKSLPVIEIWDQMTVKEL 67


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 168 KKNTITYQCCPEPYV 182


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 236 KKNTITYQCCPEPYV 250


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 519 KRNTSVSQCCNAPXV 475
           K+NT   QCC  P V
Sbjct: 236 KKNTITYQCCPEPYV 250


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 RRRYLCTLGAGPPPFT 181
           R R +C + AG PP T
Sbjct: 627 RTRTVCGVAAGDPPLT 642


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 253 RRSFLQNVDRRSRARLNWPLFSVSSKRRRAGSERTQISPT 134
           R+S  Q    RSR+R     FS S   RR+ S     SP+
Sbjct: 8   RKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPS 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,760
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)