Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N13
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    30   0.30 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   0.70 
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    29   0.70 
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   8.6  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.6  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 457 LLMDTQGTFDSSSTVRDCSIIFALSTLISSV-QIYNLKENLQEDDLQYLQLFTEYGKLLK 633
           LL+D +GT  S S V+D    +A S   S V + Y   ENL+E      +      KL  
Sbjct: 5   LLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL-- 62

Query: 634 NEDGSKAFQMLMFLIRDWPYYYE 702
           + +GSK     M   R W   YE
Sbjct: 63  HAEGSKERSFKMVQGRIWKKGYE 85


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 556 YNLKENLQED-DLQYLQLFTEYGKLL--KNEDGSKA--FQMLMFLIRDWPYYYEHAFGAK 720
           ++L  N+ ED D   L     Y KLL  K   G+K   F+ + FL  +W +  EH +   
Sbjct: 530 WSLPTNVDEDYDNVLLDSLKFYFKLLTLKLSSGNKNLYFKEIDFLENEWAFLNEHIYWIN 589

Query: 721 GGE 729
           GG+
Sbjct: 590 GGD 592


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +1

Query: 31  SLEKTLFSFGAIESNRNIEDLINMSGLRSVQVVNVNDNHNYVLEDNTLQRILLREDVKDL 210
           +LE  L+S   ++  R  E   + SG+R + ++   D+H   L ++ +  I  R    + 
Sbjct: 107 ALEIALWSLIRVDDQRLFELCHSKSGIRLLSIIFDFDSHPDWLREDVMFNIAERILKSNF 166

Query: 211 PLVVVSVAGAYRGGKSFLLSYFL 279
           P V+V+VA    G KS    YFL
Sbjct: 167 PNVLVNVASKI-GPKSI---YFL 185


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 542 DIRVESANIMEQSRTVLLESKVPCVSINSTATFSPAAVVVINGSGY 405
           +  +E  +  +    VLLESK   +     +TF   A ++++G G+
Sbjct: 164 EAEIEELSTADDVDDVLLESKYEELDDMDPSTFEAKAAMILHGLGF 209


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 370 GGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQG 477
           G   +HTT +LM   P + T  A E    L   T+G
Sbjct: 746 GAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKG 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,749
Number of Sequences: 5004
Number of extensions: 55883
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)