Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_N13
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 51 2e-10
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 58 7e-09
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 46 4e-05
04_01_0106 + 1102880-1105691,1105781-1105806 31 1.3
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 31 1.3
04_03_0479 - 16420948-16421238,16421519-16421764,16422676-164228... 29 2.9
04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362... 29 5.2
11_02_0149 - 8801675-8804332 28 6.8
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 50.8 bits (116), Expect(2) = 2e-10
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Frame = +1
Query: 394 GILMYPEPFITTTAAGEKVAVLLMDTQGTFDS--SSTVRDCSIIFALSTLISSVQIYNLK 567
GI ++ P + G KV+VL +DT+G F+S S V D IFAL+T++SSV IYNL
Sbjct: 90 GIWIWGTP-VEMDIDGSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSVLIYNLP 146
Query: 568 ENLQEDDLQYLQLFTE-----YGKLLKNEDGSKAFQMLMFLIRDW 687
E ++E D+ L E YG++ + + ++L + RD+
Sbjct: 147 ETVREADISRLSFAVEIAEEFYGRVKGQDVAFEPAKLLWLIQRDF 191
Score = 32.7 bits (71), Expect(2) = 2e-10
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 205 DLPLVVVSVAGAYRGGKSFLLSYFL 279
+ P+ VV V G YR GKSFLL+ L
Sbjct: 59 ETPIAVVGVIGPYRSGKSFLLNQLL 83
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 58.0 bits (134), Expect = 7e-09
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Frame = +1
Query: 205 DLPLVVVSVAGAYRGGKSFLLSYFLRYLNSPTEKRNENGDWLGNETDPLIGFXWKGGSER 384
+ P+ V+V G YR GKSFLL+ L + G +G+ D
Sbjct: 62 ETPIAAVAVIGPYRSGKSFLLNQLLSLTCN-------KGFGVGHMRDT------------ 102
Query: 385 HTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDS--SSTVRDCSIIFALSTLISSVQIY 558
T GI ++ P I G KV+VL +DT+G F+S S V D IFAL+T++SS+ IY
Sbjct: 103 KTKGIWVWGTP-IELDVNGSKVSVLYLDTEG-FESIGKSNVYD-DRIFALATVLSSILIY 159
Query: 559 NLKENLQEDDLQYLQLFTE 615
NL E ++E D+ L E
Sbjct: 160 NLPETIREADISRLSFAVE 178
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 45.6 bits (103), Expect = 4e-05
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 1/175 (0%)
Frame = +1
Query: 112 RSVQVVNVNDNHNYVLEDNTLQRILLREDVKDLPLVVVSVAGAYRGGKSFLLSYFLRYLN 291
R +++V ++ +V++ + + L VK P+ VVSV G R GKSF+L+ L
Sbjct: 34 RPLRLVYCDEKGKFVMDPEAVAALQL---VKG-PVGVVSVCGRARQGKSFVLNQLL---- 85
Query: 292 SPTEKRNENGDWLGNETDPLIGFXWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDT 471
G + GF T G+ M+ P T G + ++L+DT
Sbjct: 86 -------------GRSS----GFQVAPTHRPCTKGLWMWSAPLKRTGLDGTEYNLVLLDT 128
Query: 472 QGTFDSSSTVRDCSI-IFALSTLISSVQIYNLKENLQEDDLQYLQLFTEYGKLLK 633
+G D+ SI IF+L+ L+SS+ IYN + E L L L TE K ++
Sbjct: 129 EG-IDAYDQTGTYSIQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTEMTKHIR 182
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 25 WRSLEKTLFSFGAIESNRNIEDLINMSGLRSVQVVNVNDNH 147
W+SL+ +F+ G SN+ +E L ++ LRS+++ +V H
Sbjct: 686 WQSLDINVFT-GISASNKLVEQLAKLTQLRSLKLSDVKSTH 725
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -1
Query: 401 SMPVVCLSDPPFQXNPIKGSVSFPNQSPFSFRFSV 297
S+P+ C+SDP + P+K VSFP Q P R+S+
Sbjct: 140 SLPLACISDPMKKPVPLKLDVSFP-QLP-DIRWSI 172
>04_03_0479 -
16420948-16421238,16421519-16421764,16422676-16422811,
16422903-16423121,16423715-16423748,16424092-16424335
Length = 389
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 397 ILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENL 576
+L Y E T K+ VL++ T+DS +T+++C + ++ L E L
Sbjct: 120 MLFYEEGLALTRIIFTKIIVLMVIMDDTYDSHATIQECRKLNEAIQRWDESALFLLPEYL 179
Query: 577 QEDDLQYLQLFTEY 618
++ + L F E+
Sbjct: 180 KKFYNELLNNFKEF 193
>04_03_0481 +
16433648-16433746,16435136-16435394,16435883-16436261,
16436498-16436716,16436814-16436949,16437502-16437717,
16437773-16437835
Length = 456
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 397 ILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDC 510
+L Y E T K+ VL++ T+DS +T+++C
Sbjct: 273 MLFYEEGLAFTRITFTKIIVLIIMMDDTYDSHATIQEC 310
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +1
Query: 589 LQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDW 687
L+YL+L +EY K+ S+ +++++ +++DW
Sbjct: 112 LRYLKLGSEYDKISPPRCISRFYKLIVLVLKDW 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,806
Number of Sequences: 37544
Number of extensions: 360909
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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