Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_N13
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 239 1e-63
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 239 1e-63
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 239 1e-63
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 177 9e-45
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 29 2.6
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 29 2.6
AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical ... 28 6.1
Z70204-2|CAA94112.1| 169|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 239 bits (585), Expect = 1e-63
Identities = 121/229 (52%), Positives = 161/229 (70%), Gaps = 9/229 (3%)
Frame = +1
Query: 79 NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVAGAYRGG 252
++ED++ ++V+VV V + +H++ L L++ILL V D + V+ VAGAYR G
Sbjct: 20 HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKG 79
Query: 253 KSFLLSYFLRYLN--SPTEK-----RNENGDWLGNETDPLIGFXWKGGSERHTTGILMYP 411
KSFLL++FLRYL S +K +N W+ + PL GF W+GGSER T GIL++
Sbjct: 80 KSFLLNFFLRYLTWRSKADKVMGEVELDNSQWM-SPNSPLSGFSWRGGSERDTNGILIWS 138
Query: 412 EPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDDL 591
EPFI GE++AVLLMDTQG FDS STV+DC+ IFALST+ISSVQIYNL +N+QEDDL
Sbjct: 139 EPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDL 198
Query: 592 QYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEXLL 738
Q+LQLFTEYG+L + SK FQ L+FL+RDW + YE FG +GG+ +L
Sbjct: 199 QHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQGGQRVL 247
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 239 bits (585), Expect = 1e-63
Identities = 121/229 (52%), Positives = 161/229 (70%), Gaps = 9/229 (3%)
Frame = +1
Query: 79 NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVAGAYRGG 252
++ED++ ++V+VV V + +H++ L L++ILL V D + V+ VAGAYR G
Sbjct: 20 HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKG 79
Query: 253 KSFLLSYFLRYLN--SPTEK-----RNENGDWLGNETDPLIGFXWKGGSERHTTGILMYP 411
KSFLL++FLRYL S +K +N W+ + PL GF W+GGSER T GIL++
Sbjct: 80 KSFLLNFFLRYLTWRSKADKVMGEVELDNSQWM-SPNSPLSGFSWRGGSERDTNGILIWS 138
Query: 412 EPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDDL 591
EPFI GE++AVLLMDTQG FDS STV+DC+ IFALST+ISSVQIYNL +N+QEDDL
Sbjct: 139 EPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDL 198
Query: 592 QYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEXLL 738
Q+LQLFTEYG+L + SK FQ L+FL+RDW + YE FG +GG+ +L
Sbjct: 199 QHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQGGQRVL 247
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 239 bits (585), Expect = 1e-63
Identities = 121/229 (52%), Positives = 161/229 (70%), Gaps = 9/229 (3%)
Frame = +1
Query: 79 NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVAGAYRGG 252
++ED++ ++V+VV V + +H++ L L++ILL V D + V+ VAGAYR G
Sbjct: 20 HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVAGAYRKG 79
Query: 253 KSFLLSYFLRYLN--SPTEK-----RNENGDWLGNETDPLIGFXWKGGSERHTTGILMYP 411
KSFLL++FLRYL S +K +N W+ + PL GF W+GGSER T GIL++
Sbjct: 80 KSFLLNFFLRYLTWRSKADKVMGEVELDNSQWM-SPNSPLSGFSWRGGSERDTNGILIWS 138
Query: 412 EPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDDL 591
EPFI GE++AVLLMDTQG FDS STV+DC+ IFALST+ISSVQIYNL +N+QEDDL
Sbjct: 139 EPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKDCATIFALSTMISSVQIYNLSQNIQEDDL 198
Query: 592 QYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGAKGGEXLL 738
Q+LQLFTEYG+L + SK FQ L+FL+RDW + YE FG +GG+ +L
Sbjct: 199 QHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQGGQRVL 247
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 177 bits (430), Expect = 9e-45
Identities = 90/216 (41%), Positives = 138/216 (63%), Gaps = 6/216 (2%)
Frame = +1
Query: 109 LRSVQVVNVNDNH--NYVLEDNTLQRILLREDVKDLPLVVVSVAGAYRGGKSFLLSYFLR 282
+R VQ++ + + L ++ L +L + +V++SVAGA+R GKSFLL++FL
Sbjct: 27 VRPVQIIAPSSTQPGKFRLNESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLE 86
Query: 283 YLNS--PTEKRNENGDWLGNETDPLIGFXWKGGSERHTTGILMYPEPFITTTAAGEKVAV 456
YL S +++ + + +WL ++ L GF W+ G +R T GI ++ EP + + GE AV
Sbjct: 87 YLYSLHKSQQSDSSLEWLTDDCQ-LHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAV 145
Query: 457 LLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDDLQYLQLFTEYGKLLKN 636
+LMDTQGTFD++ST + C +FALST++SSVQIYN+ +N+QED LQ+L LF EYG++
Sbjct: 146 VLMDTQGTFDNNSTYQQCMTVFALSTIVSSVQIYNVVDNIQEDALQHLSLFVEYGRIAME 205
Query: 637 E--DGSKAFQMLMFLIRDWPYYYEHAFGAKGGEXLL 738
+ + K FQ L+F +RD+ E+ FG GG L
Sbjct: 206 QPHNFGKPFQQLVFCVRDFKNQEEYEFGENGGTDFL 241
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 409 PEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDD 588
PE +T A + + D+ G S + IIF ++ +I + +Y K N +
Sbjct: 1231 PEIVVTVGNASFSIGEVSYDSPGLSSSLFFIIMFFIIFMIALIICLIVLYRRKSNTHQRQ 1290
Query: 589 LQYLQ 603
++YL+
Sbjct: 1291 MKYLK 1295
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
Length = 1951
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 409 PEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTLISSVQIYNLKENLQEDD 588
PE +T A + + D+ G S + IIF ++ +I + +Y K N +
Sbjct: 1237 PEIVVTVGNASFSIGEVSYDSPGLSSSLFFIIMFFIIFMIALIICLIVLYRRKSNTHQRQ 1296
Query: 589 LQYLQ 603
++YL+
Sbjct: 1297 MKYLK 1301
>AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical
protein ZC328.2 protein.
Length = 386
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 515 MEQSRTVLLESKVPCVSINSTATFSPAAVVVINGSGYISMPVVCLSDPPFQXNPIKGSVS 336
M + T+++ V +I AT S +A G G S+ + L PP + P+ S
Sbjct: 1 MNKRPTMIIPPTVEISTIIDVATPSSSADTENRGDGESSVFIGQLQHPPLRRRPVSAMAS 60
Query: 335 FP 330
P
Sbjct: 61 LP 62
>Z70204-2|CAA94112.1| 169|Caenorhabditis elegans Hypothetical
protein C11G6.2 protein.
Length = 169
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 160 EDNTLQRILLREDVKDLPLVVVSVAGAYRGGKSFLLSYFLRYLNSPTEKR 309
E L ++R+D K+ V++ + GA R GK+FL+ +N KR
Sbjct: 5 EQQDLLNKIIRDDSKNKQ-VLLMINGAARTGKTFLIKLIENSMNRSAGKR 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,199
Number of Sequences: 27780
Number of extensions: 309903
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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