Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N13
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.11 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 390  YGHTNVSGAIYHHYSCRRKGGSAVNGYTRHLR 485
            Y  ++ S +I  H+     GG+++ GYT H R
Sbjct: 1411 YVTSSTSSSILLHWKSGHNGGASLTGYTLHYR 1442


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 390  YGHTNVSGAIYHHYSCRRKGGSAVNGYTRHLR 485
            Y  ++ S +I  H+     GG+++ GYT H R
Sbjct: 1407 YVTSSTSSSILLHWKSGHNGGASLTGYTLHYR 1438


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 328 LGNETDPLIGFXWKGGSERHTTGILMYPEPFITTTAAG 441
           +G++  P   F     + R+    L+Y   FITT  AG
Sbjct: 208 VGSKLRPRSSFQGPPFTYRYGFSFLLYVSGFITTEVAG 245


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 136 NDNHNYVLEDNTLQRILLREDVKDLPLV--VVSVAGAY 243
           ND+++    D T   I+   DV+D+P V  V S  G Y
Sbjct: 308 NDSNSLPFIDRTPIEIINSGDVQDVPWVTGVTSEEGLY 345


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 136 NDNHNYVLEDNTLQRILLREDVKDLPLV--VVSVAGAY 243
           ND+++    D T   I+   DV+D+P V  V S  G Y
Sbjct: 308 NDSNSLPFIDRTPIEIINSGDVQDVPWVTGVTSEEGLY 345


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 494 LLESKVPCVSINS--TATFSPAAVVVINGSGYISMPVVCLS 378
           L+E +V  V ++   T   SPAAV     SG+  +PV+ +S
Sbjct: 91  LIERQVYAVVVSHPLTGDLSPAAVSYT--SGFYHIPVIGIS 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,881
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)