Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N08
         (388 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    25   0.26 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   2.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    20   7.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 150 LTYNCTH-KYYGEGVSCSSFSAFLVDFN 70
           LTYN T+ KYY   V C + S   + FN
Sbjct: 46  LTYNNTNRKYYWLNVCCLNLSIVTIFFN 73


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 127 FMSAVVSQPLVFKANHPFVFFLK 195
           F+   VS  L+F    PF FF++
Sbjct: 173 FLPVYVSYLLIFVQQIPFCFFVR 195


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 219 RSFPPLDINYFNNNNTADHEVFIE 290
           R FP L++   + + +AD+ +F+E
Sbjct: 47  RMFPALNLKITDLDPSADYCLFLE 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,861
Number of Sequences: 336
Number of extensions: 1035
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)