Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N08
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   1.4  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   2.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   2.4  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   3.1  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.5  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 159 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 43
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 159 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 43
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 126 IYECSCKSAACIQSEPSLRILPKRRRCHSF*RSFPPLDINYFNNNNT-ADHEVFIEDPIQ 302
           +++ S  S+ C   + S   L     CHS   S      N  NN+NT A H +  E P +
Sbjct: 104 LFKTSSMSSDCYSPQKSRESL--NSLCHSPAPSVSSCG-NALNNDNTSASHSLTDEQPFE 160

Query: 303 VFDSINRF 326
              S N F
Sbjct: 161 TDSSANLF 168


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 192 KRRRCHSF*RSFPPLDINYFNNNNTADHEVFIEDPIQV 305
           +RR+ ++  R++PP +     N+N  D   F ED + V
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLPV 147


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 150 LTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKAFSF 25
           +T     K + +G   ++  +F+ D N+ F+N+ TY    SF
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 150 LTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNS-LTYRKAFS 28
           + Y C +K+Y    + +  S++L++    FL++ L + ++F+
Sbjct: 26  INYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSFA 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,816
Number of Sequences: 5004
Number of extensions: 17337
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)