Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N08
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0012 - 7346282-7347136,7347234-7347593                           29   1.7  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   3.0  
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     27   3.9  
01_06_0824 - 32243495-32244319,32244449-32244859                       27   6.9  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    26   9.1  

>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 127 FMSAVVSQPLVFKANHPFVFFL---KGDGVTLFNGVFHP 234
           F+   ++ P+ F A+HPF FF+   K D V     V  P
Sbjct: 362 FLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDP 400


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 25  KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXVVFMSAVVSQPLVFKANHPFVFFLKGD- 201
           +G++L VS    K                   +   SA +++  V  A+HPF+F ++ D 
Sbjct: 394 EGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAEDFV--ADHPFLFLIQEDM 451

Query: 202 -GVTLFNG 222
            GV LF G
Sbjct: 452 TGVVLFVG 459



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 124 VFMSAVVSQP--LVFKANHPFVFFLKGD--GVTLFNG 222
           V +S   S+P  L F A+HPF+F ++ D  GV LF G
Sbjct: 674 VMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIG 710


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 121 VVFMSAVVSQPLVFKANHPFVFFLKGD--GVTLFNG 222
           V F SA V+  + F A+HPF+F ++ D  GV LF G
Sbjct: 218 VSFRSAPVT--VDFVADHPFLFLIREDMTGVVLFIG 251


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 160 FKANHPFVFFLKGD--GVTLFNG 222
           F A+HPF+F +K D  GV +F G
Sbjct: 380 FVADHPFMFLIKEDLTGVVVFAG 402


>07_03_0715 +
           20889399-20890111,20890950-20891060,20891128-20891338,
           20891414-20891474,20891719-20891956,20892046-20892196,
           20892415-20892703,20893464-20894207,20894720-20894851,
           20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 197 ETVSLFLTEFSTLRY*LFQQQ*YSGSRGFYRRPNTSI 307
           ET + F T+   L   + ++  ++G + F+RR NT++
Sbjct: 820 ETDTQFFTDTKMLLLDVLKKSEHTGKKAFFRRENTAL 856


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,481,044
Number of Sequences: 37544
Number of extensions: 93866
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)