Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_N06
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 262 6e-71
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 191 9e-50
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 161 2e-40
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 157 2e-39
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 152 7e-38
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 141 1e-34
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 132 5e-32
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 118 8e-28
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 60 3e-10
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.84
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.9
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 5.9
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 7.8
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 262 bits (641), Expect = 6e-71
Identities = 125/226 (55%), Positives = 174/226 (76%), Gaps = 1/226 (0%)
Frame = +3
Query: 174 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 353
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 354 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 533
+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+KGIHPTVI++ FQ+A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 534 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVG 713
+ ++ + ++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V++P V
Sbjct: 131 TVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP---RVA 187
Query: 714 ARVDLRDVKVIERIGGTVXXAXLIQGXVIPHRAA-NVNGPHXIEKA 848
VDL+D+++++++GG + LI G + A + GP IEKA
Sbjct: 188 TNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKA 233
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 191 bits (466), Expect = 9e-50
Identities = 104/216 (48%), Positives = 147/216 (68%), Gaps = 2/216 (0%)
Frame = +3
Query: 210 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 389
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 390 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV 569
++QD E GDGTT VVV+AGALL+ AE L+ KGIHP I+DG++KA Q+A++ ++ +S V
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 570 DLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKV 743
D + E+ L ++A TSL SKVVS+ A IAV A+ +V + VD +KV
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADL----QRKDVDFELIKV 213
Query: 744 IERIGGTVXXAXLIQGXVIPHRAANVNGPHXIEKAK 851
++GG+V L++G V+ ++ PH IE AK
Sbjct: 214 DGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAK 249
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 161 bits (390), Expect = 2e-40
Identities = 78/200 (39%), Positives = 132/200 (66%), Gaps = 1/200 (0%)
Frame = +3
Query: 204 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVE 383
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++E
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 384 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMST 563
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 564 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKV 743
PV++++ + + T + +K+V++ S ++ +A++A+R V S +D++
Sbjct: 141 PVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVAS--TSNGRMEIDIKRYAR 198
Query: 744 IERI-GGTVXXAXLIQGXVI 800
+E++ GG + + ++ G ++
Sbjct: 199 VEKVPGGEIESSCVLDGVML 218
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 157 bits (380), Expect = 2e-39
Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 4/170 (2%)
Frame = +3
Query: 180 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 359
D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+K + ++H
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
Query: 360 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 539
PAAK LV+++RAQD E GDGTTSVVV AG LL A ++ G+ +I G++KA QLA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 540 QVVENMSTPVDLNNE----DALLKAAATSLNSKVVSQHSTILAPIAVQAI 677
++ ++ +DL++E D L K A+T++NSK++ +ST + V A+
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAV 187
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 152 bits (368), Expect = 7e-38
Identities = 83/225 (36%), Positives = 137/225 (60%), Gaps = 1/225 (0%)
Frame = +3
Query: 180 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 359
+K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL + V H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 360 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 539
PA K+LVEL++ QD E GDGTTSVV+IA LL A +L++ IHPT I G++ A++ A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 540 Q-VVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGA 716
+ + + +S VD +++L+ A TS++SK++ S + +AV A+ +V G
Sbjct: 135 KFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKG-ET 193
Query: 717 RVDLRDVKVIERIGGTVXXAXLIQGXVIPHRAANVNGPHXIEKAK 851
R ++ V +++ G + + L++G + A+ ++ AK
Sbjct: 194 RYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAK 238
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 141 bits (341), Expect = 1e-34
Identities = 82/221 (37%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Frame = +3
Query: 204 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 380
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 381 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV----- 545
+S+ QD E GDGTTSV V A LL AE ++ IHP VI DG++ A + A+
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 546 VENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVD 725
++N S P ++ L A T+L+SK++SQ+ A +AV A+ + +
Sbjct: 142 IDNSSDPAKFRSD--LENIARTTLSSKILSQNKNHFAQLAVDAVLRLK--------GSTN 191
Query: 726 LRDVKVIERIGGTVXXAXLIQGXVIPHRAANVNGPHXIEKA 848
L ++++I+ +GG + + L +G ++ ++ VN P +E A
Sbjct: 192 LDNIQIIKILGGKLDDSFLDEGFIL-NKTIGVNCPKVMENA 231
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 132 bits (320), Expect = 5e-32
Identities = 72/212 (33%), Positives = 120/212 (56%)
Frame = +3
Query: 213 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSR 392
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 393 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVD 572
AQD GDGTTSV ++ G LL AE +++G+HP++ISDGF A AL +++ T +
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140
Query: 573 LNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIER 752
++ E LL A TSL++K+ S+ LAP V AI + P +DL V++++
Sbjct: 141 VDRE-VLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRP-----DEPIDLHMVEIMKM 194
Query: 753 IGGTVXXAXLIQGXVIPHRAANVNGPHXIEKA 848
+ LI+G ++ H A + + P ++ A
Sbjct: 195 QNRSASDTQLIRGLLLDHGARHPDMPKQVKNA 226
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 118 bits (285), Expect = 8e-28
Identities = 68/229 (29%), Positives = 127/229 (55%), Gaps = 2/229 (0%)
Frame = +3
Query: 123 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 302
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQ 60
Query: 303 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 482
+ +TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++
Sbjct: 61 QTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRM 120
Query: 483 GIHPTVISDGFQKALQLALQVVENMSTP--VDLNNEDALLKAAATSLNSKVVSQHSTILA 656
G+ P I+ G++ AL ++V+E + + +E L+KA T ++SK + L+
Sbjct: 121 GLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYG-NEDFLS 179
Query: 657 PIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVXXAXLIQGXVIP 803
+ +AI V+ S + ++ +++V++ +G ++ + +++G V P
Sbjct: 180 DLVAKAILTVLPKDPS----KFNVDNIRVVKIMGSSLYNSQVVKGMVFP 224
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 60.5 bits (140), Expect = 3e-10
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Frame = +3
Query: 108 RLNINIMAPKAGGD-AIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKM 284
RL + I + G A+ + KD D R S + +A A+ +LGP+G + +
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 285 IQAANGEVTITNDGATILKQMSV----IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 452
I G IT DG T+ + +S+ + A+++ +++ + AGDGTT+ V+ A+
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 453 LDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAATSLN 620
+ + G +P + G Q A+ ++ ++ + D+ + + + A S N
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQ--ANKRDITTSEEISQVATISAN 184
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 605 CNITKFQSSFTTLNYFGTHCSASNSS 682
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 347 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 460
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 558 STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 698
ST D L+ + N ++ H +ILAP +RA++ P+
Sbjct: 2537 STSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 707 TTNNRFHYCSNC--LHCNGCQNS*VL*NYFGI 618
T NR H+C NC + CN C + + + GI
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 471 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL---NNEDALL 596
+L +G ++ D Q K + AL+V++NM T VDL N ALL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASALL 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,344
Number of Sequences: 5004
Number of extensions: 60481
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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