Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N01
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    29   1.2  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   2.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.2  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   8.2  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 452 TSIYFLFNDNNIQLIQLKFMNCYMCNS-KNLKFFVS 556
           TS +F+ ++N + L+Q   +N Y+C+    L+FF S
Sbjct: 17  TSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTS 52


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 461 KSKLKCNTYMTLVYFYLRIVLLFHYCF 381
           +SKL  N Y TL  F   I+L+F+ CF
Sbjct: 307 QSKLNKNEYSTLEEFESDILLMFNNCF 333


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 119 RQVKFQFNPIKIPEAH*SCANKNIL*SLKE*NFQFEKYEHKMFL 250
           +Q+KF F  +  PEA+    + NIL SL     +F K+   +FL
Sbjct: 604 KQLKFNFALVLSPEANKYWLDLNILVSLLNRAKEFPKWFEDLFL 647


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 306 SILWMLIYTIC-YAVIINGIRNILCSYFSN*KFHSF 202
           +I +M+I  +  +AV I+GI+N+L S+F   K   F
Sbjct: 517 NIYFMIICNLIGFAVGIDGIKNVLVSFFLTLKGKKF 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,121
Number of Sequences: 5004
Number of extensions: 65292
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)