Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_N01
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    35   0.068
Z78541-1|CAB01740.1|  452|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = -3

Query: 831 RLPNTERGFFCFLKFVFSYDLKNIVLQFYCNCFL*FTMSISFYLIYLVTSRFPYS 667
           R+ N   GF  FL   +SY +   +L F  N FL   +S+ F  I L T RFP S
Sbjct: 74  RIVNIYLGFSQFLGHWWSYMIFTTMLHFAVNSFLSIMLSMVFRCISLKTLRFPTS 128


>Z78541-1|CAB01740.1|  452|Caenorhabditis elegans Hypothetical
           protein F19D8.1 protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 485 YYCH*IKNKSKLKCNTYMTLVYF--YLRIVL--LFHYCFIL 375
           Y+   + NK KLKCN+    + F   LRI L  L  YCF++
Sbjct: 16  YFSPIVANKQKLKCNSKCAWMKFRNVLRIALGHLALYCFVV 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,279
Number of Sequences: 27780
Number of extensions: 354444
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)