Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M24
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   4.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   7.7  

>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 418 LECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFS 281
           L C F+F +  G+ +  L CLL    +  +   + +L+  +GI F+
Sbjct: 19  LPCLFIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFA 64


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 415 ECCFLFISFFGLQIDQLRCLLNFLYSCFVQKHKRLLYIEMGIRFSL 278
           E   L +S    + D L  LL FL+ C     KR ++ ++G  FSL
Sbjct: 178 EASCLVLSRLFSRDDGLDLLLGFLHHCESSWFKRSIFYKIGCLFSL 223


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 520 FSIIVHSFITY-FNDFFLLI*SVFIIVGFQKIQYN*IRSFITIDQIL*DSSFEK 678
           FS+I  SF+    N F LLI S+FII G         R+FI     L   SFEK
Sbjct: 523 FSLIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCF-FRTFIWTTYKLYPFSFEK 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,813
Number of Sequences: 5004
Number of extensions: 76046
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)