Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M23
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    73   2e-14
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.5  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.6  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
 Frame = +1

Query: 181 MLTLWNLFEATLLCLNAVCVLHEERFMQKIGWGANTQTQGFED-QSSMKFQILNLVRSIR 357
           M    N+   TLL LNAV +L E+RF+ +IGW + +   GF D Q ++K +IL+L+R+IR
Sbjct: 1   MFGFGNILYVTLLLLNAVAILSEDRFLGRIGW-SQSAALGFGDRQDTIKSRILHLIRAIR 59

Query: 358 TVTKIPLIILNILTIMFKLLLG 423
           TV   PLI +N + I++ L+LG
Sbjct: 60  TVMTFPLIAINTIVIVYNLVLG 81


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 345 EVN*NSYKDSSHHTQYPDNNVQTVTG 422
           EVN NSY      T Y D   Q+VTG
Sbjct: 334 EVNVNSYNGGIPSTSYNDTPQQSVTG 359


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 428 HYPSNSLNIIVRILSMMRGIFVTVLIDL-TKLRIWNFIED 312
           H+P  S+N +   +S MR I V ++I L  +L++     D
Sbjct: 506 HFPQTSMNTLNTFISTMRLITVILMIPLDPRLKVLGISRD 545


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 MCITRRKIHAENWLGSKYPNPGL*RSIFD 320
           + I R KI  E+W  +KY + G    +FD
Sbjct: 309 LAIDRLKIFVEDWKNNKYSDNGPRIPVFD 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,748
Number of Sequences: 5004
Number of extensions: 32022
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)