Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M23
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26167| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)          29   2.1  
SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)           29   2.7  
SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11)           28   6.3  

>SB_26167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 37/74 (50%), Positives = 52/74 (70%)
 Frame = +1

Query: 148 LGQLRS*SERNMLTLWNLFEATLLCLNAVCVLHEERFMQKIGWGANTQTQGFEDQSSMKF 327
           LGQ  S S+    TL++L EA LL +NA+ +LHEERF+ KIGWG++ Q  GF ++   K 
Sbjct: 50  LGQDTSKSKM-AFTLYSLLEACLLVVNAMAILHEERFLSKIGWGSD-QLSGFGEEKGTKH 107

Query: 328 QILNLVRSIRTVTK 369
           QI+NL+ S+RTV +
Sbjct: 108 QIINLIHSVRTVMR 121


>SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)
          Length = 405

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +1

Query: 223 LNAVCVLHEERF-----MQKI---GWGANTQTQGFEDQSSMKFQILNL 342
           L  +CV+H+ RF     M K+   G G  T  QG  D+S   F  LNL
Sbjct: 24  LTVICVIHQPRFEIFDRMHKVLFLGPGGRTVFQGTVDESMAYFSSLNL 71


>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
          Length = 495

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 295 QGFEDQSSMKFQILNLVRSIRTVTKIPLIILNI 393
           QG+E QSS+ F+IL+ VRS +    +  ++L I
Sbjct: 428 QGYERQSSLLFKILSSVRSHQASPHLAQLLLRI 460


>SB_39751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 422 DNEH*YRNINRKYKNLNSVIIRYFNFVN 505
           +N+  Y+NIN K  N+N++II   N++N
Sbjct: 50  NNDFNYKNIN-KSNNINNIIINNNNYIN 76


>SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11)
          Length = 341

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 317 ED*SSKPWVWVFAPQPIFCMNL--SSCNTHTAL 225
           E+ + +PW++    +P++C NL    C  H ++
Sbjct: 173 ENRTLRPWIFAMGHRPMYCSNLDRDDCTNHLSI 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,202
Number of Sequences: 59808
Number of extensions: 222568
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)