Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M19
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   1.1  
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = -2

Query: 219 FYYITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM 40
           + ++T+NT +S  +    SPVT    I++  S        N   + ++FG  +  ++R+ 
Sbjct: 141 YRFVTYNTSSSSNVSTTRSPVTVARTITSQSS--------NRQRVCEIFGNTSGRSRRVR 192

Query: 39  GRHFEQSSCQN 7
           G+  +Q+S  N
Sbjct: 193 GKRVQQNSTNN 203


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 22  LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRH--WRRTKLKL 183
           LF     K   +  K  + L + R IP     R G  +RY  KRRH  +++ K+K+
Sbjct: 596 LFGKKVRKPVRLLTKYCRLLFRGRKIPLRKGKRGGLVVRYRKKRRHLSFKQGKVKM 651


>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 171 CPSPVTPLSVISNSVSCAH 115
           CPSP TP S  SNS S A+
Sbjct: 40  CPSPTTPPSSRSNSSSSAY 58


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  KMSAHKTFIIKRKLAKKLKQNRPIP 102
           KM+A + F  +RK A K   N P+P
Sbjct: 898 KMAADRLFKFRRKFASKPNANPPLP 922


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 207 TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPL 103
           T + F      L P PV PL + S+  S  H +P+
Sbjct: 126 TLDEFPRCTGPLVPRPVRPLMLASDQFSSLHMFPM 160


>SB_13638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  KLAKKLKQNRPIPQWVRMRTGNTIRYNAK 150
           KLA K   N   P+++R+   N  RYN +
Sbjct: 139 KLAHKPLYNNSFPEYLRLSVRNDTRYNLR 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,143,698
Number of Sequences: 59808
Number of extensions: 124636
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)