Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M15
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    45   9e-06
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    31   0.16 
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    29   0.85 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   6.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.0  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = +1

Query: 13  LFGGWRTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGI 192
           +FGGW   + L + +P YE    S N        +     DM  ++ V   + PEG+T I
Sbjct: 313 VFGGWNYLFQLDWKMP-YEEFRSSKNRREYLDIPLAWSPGDMIYEKAVWSYVFPEGATNI 371

Query: 193 KLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDF-QIRYTF 339
           ++ +P  ++    +    +LDT GR V ++   N+ +    D   I Y +
Sbjct: 372 EIEMPVEISNSNVTKIHKFLDTLGRQVFTYEALNVTDGVPSDIVHISYEY 421


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 319 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLD 429
           F   +TFP  L++ EP+L+V   YT F+  I+Y  L+
Sbjct: 291 FHKYFTFPLRLLIFEPILLVVSTYTAFVYGILYGLLE 327


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 7   ADLFGGWRTHYTLG--YNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEG 180
           AD     R HY      N+   + LYH      L++  + H F+D  VD +  +I L + 
Sbjct: 276 ADQLNLLRAHYGKAGSENIAVIKQLYHE-----LQIPELYHKFEDDMVDSISKEIDLIDE 330

Query: 181 STGIK 195
           STG+K
Sbjct: 331 STGLK 335


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +3

Query: 306 PYPRFSNPLY----IPTSADVAGTTFSCWL 383
           P P  S+PLY    IPT  D+  T  S WL
Sbjct: 277 PMPLISHPLYSSSWIPTLHDLVSTRCSVWL 306


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 94   YLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPV 273
            Y ++  +  H+    Q +E   + +    S   KL    ++ R P S   + LDT  R  
Sbjct: 1557 YTIESNTTAHLL--CQFEEACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRNC 1614

Query: 274  ISFI-KKNIVENHIQD 318
            I F  K+N+ E+ I +
Sbjct: 1615 IKFSHKQNLEEDFIHE 1630


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 232  SLHFTYLDTKGRPVISFIKKN 294
            S+ F  +D  G PVI F+K+N
Sbjct: 1511 SVDFQSVDCHGNPVIEFLKRN 1531


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +1

Query: 73  LYHSGNEYLLKMR---SIDHIFDDMQ-VDELV-TKIILPEGSTGIKLNIPYSVTRLPDSL 237
           LY +  E L+  R   S D++   +  VD+L+ TKI++  G T      P + + L D L
Sbjct: 356 LYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMAFSMLADML 415

Query: 238 HFTYLDTKGRPVISFI 285
           H+  ++   + +   I
Sbjct: 416 HYVRMELSPQQIYKVI 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,615
Number of Sequences: 5004
Number of extensions: 63478
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)