Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M15
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 160 8e-40
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 30 1.8
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 28 7.4
AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical ... 28 7.4
AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical ... 28 7.4
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 27 9.8
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 27 9.8
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 160 bits (389), Expect = 8e-40
Identities = 73/149 (48%), Positives = 100/149 (67%)
Frame = +1
Query: 13 LFGGWRTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGI 192
LFGGW+T Y +GYN+PS EYLY GN+Y LK + DH+F+D+ V++L TK++LPE +
Sbjct: 305 LFGGWKTSYVIGYNLPSEEYLYSKGNQYALKTKLFDHVFNDIVVEKLRTKVLLPEHVKRV 364
Query: 193 KLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLL 372
K+ PY+V R P+ L TYLDT GR V+ K+NIV +H Q F + Y F + ML+EPLL
Sbjct: 365 KVATPYAVDRRPEELKPTYLDTTGRLVLVLEKENIVPDHSQFFTVTYEFEFVDMLREPLL 424
Query: 373 VVGFLYTLFLCVIIYVRLDFSIHKSEHKD 459
F ++LF +I+Y R DF+I KD
Sbjct: 425 ASAFFFSLFFVIIVYSRFDFTISSDPAKD 453
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
protein F18C12.2b protein.
Length = 2271
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 199 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 318
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
protein F18C12.2a protein.
Length = 2279
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 199 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 318
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 199 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQD 318
N+PYS R S + + KG+ +++ I+ ++EN+ +D
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKD 423
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 324 NPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFFNS 440
N + I S +++ F + L YI+ Y LC+ F++S
Sbjct: 269 NWVIIKVSKEISFNFFQTFRLAYILMFAYMLCRYPFYSS 307
>AF100305-8|AAC68919.1| 179|Caenorhabditis elegans Hypothetical
protein W04B5.6 protein.
Length = 179
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 318 FSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYL--CKIRFF 434
FS +++ +D A +F C+ + V+ C Y+ CK + F
Sbjct: 94 FSEVVFLKMGSDDAPISFLCFTSVLFVYACIYVKYCKTKNF 134
>AF099915-1|AAC68771.1| 460|Caenorhabditis elegans Hypothetical
protein E02H9.6 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 318 FSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYL--CKIRFF 434
FS +++ +D A +F C+ + V+ C Y+ CK + F
Sbjct: 94 FSEVVFLKMGSDDAPISFLCFTSVLFVYACIYVKYCKTKNF 134
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 291 KHCGEPYPRFSNPLYIPTSADVAGTTFSCWLLIY 392
K PYPR PLY+ T + + + W L+Y
Sbjct: 7 KIISSPYPRTRLPLYLYTVSIIISCSLLYWNLLY 40
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 43 LGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDE 150
LG+ P + LY S E + +S+D I+DD+ D+
Sbjct: 295 LGFAQPVIKPLYFSRQEQVEPNQSVDQIYDDIIGDQ 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,549,127
Number of Sequences: 27780
Number of extensions: 357894
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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