Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M14
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        28   0.073
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   4.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 0.073
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 635 ARRDSKALIRLKAFRICFQSFAPGKRRSE 549
           + R+    I L A R+CFQ F  G+RR +
Sbjct: 191 SHRNQPTSIDLNAVRLCFQVFLEGERRGK 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 498  TIRPTAHQWSTQFTTEP 548
            T RPT   W TQ TT P
Sbjct: 1071 TTRPTTTNWPTQGTTIP 1087


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 PRPTNGLPSLPRNPSDLRLPGAKLWKQIRN 597
           P+P      + R  S +++ G+K+W+  R+
Sbjct: 57  PKPIPSFACIGRCASYIQVSGSKIWQMERS 86


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 528 TQFTTEPLRPTFTRRKTLEANTE 596
           +QF  +  R T+TR +TLE   E
Sbjct: 238 SQFERKRGRQTYTRYQTLELEKE 260


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 528 TQFTTEPLRPTFTRRKTLEANTE 596
           +QF  +  R T+TR +TLE   E
Sbjct: 240 SQFERKRGRQTYTRYQTLELEKE 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,171
Number of Sequences: 336
Number of extensions: 3919
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)