Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M14
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.56 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    29   0.74 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    28   1.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   4.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.0  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   4.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.9  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.9  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   9.2  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +2

Query: 482 PQQIRYNP---PHGPPMVYPVYHGTPPTYVY-QAQNSGSK 589
           P  ++Y P   P   P  YPVYH TP T  +     SGS+
Sbjct: 405 PNMVQYGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQ 444



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +1

Query: 439 NDPYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSD 555
           ++P H  +P++ +  A++     PRPT    +   +P++
Sbjct: 208 SNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPAN 246


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 211 RRIVRVGRTRISIFWRPIWSWQYWK*SRLPI-FWRLVWSWQHRR*SRLPVFRR 366
           RR  R+GR  IS+  RP  SWQ +  S LP+     VW   +R  + LP F R
Sbjct: 56  RRSRRLGRLSISV--RPNGSWQVYLLSSLPLRSLSRVWGQFNR--AHLPTFLR 104


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 227 TLTIRRDQKVLRTLDTNV-CFHHRISWMSH 141
           T+ IRRDQ V+ T D     FH    W++H
Sbjct: 194 TVVIRRDQSVVYTGDVGTNFFHSPTKWITH 223


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 418 RRTELSKNDPYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPR-NPSDLRLPGAK 576
           R+ ++ +       Q    Q P  + +QSAP      P + R  PS +++P  K
Sbjct: 306 RQMQMQQQQKAQQQQSPKAQQPPAHLVQSAPVQRKTTPKIQRLPPSSIQIPPPK 359


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +1

Query: 376 SWQYRE**PRLPVFRRTELSKNDP-YHDTQPLSLQSPATNKIQSAPRPTNGLP 531
           S+ Y    P  P +  ++   + P Y   QP+   +    +I + P   NGLP
Sbjct: 316 SYSYDRYTPNQPSYLESKPGNHQPSYTSEQPMYSTASVPQQISNGPTAVNGLP 368


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 470 DNGCVSWYGSFLDSSVLLKTGNRGYYSLYCHDQTCLL--KTGSR 345
           +NG   W   +L   V+L TG+  ++S+ C D +  L   TGSR
Sbjct: 624 ENGNTKWM-DYLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSR 666


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 424 TELSKNDPYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNP 549
           T LS +   +D+   S  +P  N + S+P  +   PSLP NP
Sbjct: 392 TALSNSVLNYDSNNFS-GTPQINVVPSSPSKSQSGPSLPANP 432


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +2

Query: 479 PPQQIRY---NPPHGPPMVYPVYHGT--PPTYVYQA 571
           PP Q  +    PPH PP  +P +H    PP Y +Q+
Sbjct: 164 PPTQHHHPHTRPPHHPP--HPHFHNNNYPPPYCFQS 197


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 451 HDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSDLRLPGAKLWKQIRNAFS 606
           H   P+   +  + +  ++  P++  PS+P NPS L      L+ +I +A +
Sbjct: 125 HGLDPVLANTKLSQRHSASFFPSSQEPSIPENPSSLTGEKPHLYARIDSAIN 176


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 418 RRTELSKNDPYHDTQPLSLQSPATNKIQSA 507
           R+  L   +P+  T P+S  +PA N  +SA
Sbjct: 213 RKLNLPLREPHGSTGPMSTPTPALNSSRSA 242


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 362 LKTGSRDYLLCCHDQTSRQKMGSRDYFQYCHDQIGRQKMDIRVRPTLTI 216
           LKT +R  +   HDQ S+  +   +++Q+ +  + R    +  RP L +
Sbjct: 261 LKT-TRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLHSRPVLFV 308


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 500 NPPHGPPMVYPVYHG 544
           N  HGPPMV+P   G
Sbjct: 289 NADHGPPMVFPAPFG 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,590
Number of Sequences: 5004
Number of extensions: 60266
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)