Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M14
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 33 0.25
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 31 1.0
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 1.8
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689 30 1.8
03_05_0639 - 26323328-26323630,26323962-26324057,26324458-263247... 30 2.4
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 30 2.4
01_06_0953 + 33311347-33312651 29 4.1
01_02_0007 + 10132380-10133201 29 4.1
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 5.4
08_01_0793 - 7685702-7686955 29 5.4
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 29 5.4
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 28 7.2
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532... 28 9.5
06_01_0486 - 3455030-3455770 28 9.5
01_01_1225 - 9894899-9895333 28 9.5
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = -1
Query: 526 DHWWAVGRIVSYLLRGTVVIMVVYRGMGRFW--IALSS*RRVTVATTPCIAMTRH 368
DHW A+ R++ YL +GT+ + + Y G+ R+W I + + + + + P + M+ H
Sbjct: 601 DHWRALERVMRYL-KGTMELGLHYIGILRYWRVIVILTGSLMWMRSKPLVDMSSH 654
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 500 CILFVAGDCSDNGCVSWYGSFLD 432
C+ + A D S GCV W G +D
Sbjct: 395 CVAYAAADISGRGCVMWIGDMVD 417
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = -3
Query: 692 FRPVSACRWSGYARKPFQPARRDSKALIRLKAFRICFQSFAPGKRRSEGFRG-KLG--RP 522
F P S WS R+ RRD F + P R + G KL R
Sbjct: 333 FSPASPAEWS--MREYSGGCRRDVALDCGTDGFAVLRGVKLPDTRNASVDMGVKLDECRA 390
Query: 521 LVGRGADCILFVAGDCSDNGCVSWYGSFLD 432
C+ + A D S GC+ W F+D
Sbjct: 391 RCVANCSCVAYAAADLSGGGCIMWTKPFVD 420
>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
Length = 328
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 430 ALSS*RRVTVATTPCIAMTRHAS*RR---VAVTTSCVAMTRQAARRWVAVTTSSIAMTR 263
+L S RR + IA +R A+ R AV A TR+AARRW AV S A R
Sbjct: 14 SLPSHRRPLFLPSTSIASSRWATAARRRSQAVAHQFQASTRRAARRWQAVARGSQAAAR 72
>03_05_0639 -
26323328-26323630,26323962-26324057,26324458-26324730,
26325266-26325398,26325507-26325553
Length = 283
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 323 DQTSRQKMGSRDYFQYCHDQIGRQKMDIRVRPT 225
D +K +DY YC D+IG ++D +P+
Sbjct: 89 DDDEEEKDNGKDYIVYCADEIGPSQLDNAPQPS 121
>03_05_0440 + 24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 439 NDPYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSDL 558
N + D PATN I S+PR NG S P+ PS+L
Sbjct: 1165 NSSHQDNTTSGHFDPATNNI-SSPRLPNGCDSEPQFPSEL 1203
>01_06_0953 + 33311347-33312651
Length = 434
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 488 VAGDCSDNGCVSWYGSFLDSSVLLKTGNRGYYSLYCHDQTCLLKTGSRDYLL-CCHD 321
+ G C D F D + NRG Y CL+K G DY L CCH+
Sbjct: 311 IRGYCKDGRLEEAKKLFEDMAENGYVANRGTYHTLI---PCLVKAGELDYALKCCHE 364
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 445 PYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSDLRLPGAKLWKQIRNA 600
P + PL L P N Q P+P PSLP D P L + NA
Sbjct: 132 PDPNAPPLPLPQPNPNNPQPLPQPDPNAPSLPLPQPDPNAPPLPLPQPDPNA 183
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +1
Query: 457 TQPLSLQSPATNKIQSAPRPTNG----LPSLPRNPSDLRLPG 570
T P + S +AP PT+G PS+P NP+ PG
Sbjct: 41 TTPAVVDSAVEGDAPAAPAPTSGSGPAAPSMPANPASPATPG 82
>08_01_0793 - 7685702-7686955
Length = 417
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 476 SPPQQIRYNPPHGPPMVYPVYHGTPPTYV-YQAQNS 580
SPP +NP GPP Y +Y +PP + +Q Q S
Sbjct: 49 SPPNFQTFNP-FGPPANYHLYGSSPPNFQGFQQQAS 83
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 192 PEDFLVTADCQGRADTDIHLLAAYL 266
P+ V +C GR D D+H + YL
Sbjct: 445 PDGVRVVVNCSGRGDKDVHTASKYL 469
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 660 ATPPTSRNRAKFASSA*RETTGIMXKLKSIVS 755
A PP SR+ + +SSA R+ TG M + S+VS
Sbjct: 339 AAPPFSRSPSSRSSSASRQPTGPMAQDDSVVS 370
>10_06_0141 -
11151344-11151531,11151926-11152275,11153119-11153274,
11153505-11153674,11155431-11155589,11157139-11157447,
11157550-11157750
Length = 510
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Frame = +1
Query: 223 RVGRTRISIFWRPIWSWQYWK*SRLPIFWRLVWSWQH 333
R + ++ ++ R + W YW + W + W+ Q+
Sbjct: 467 RFAQAQLDVYGRATFGWAYWTYKNVNNHWSMQWNIQN 503
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 476 SPPQQIRYNPPHGPPMVYPVYHGTPPTYV 562
+PP Y PP PP V P +PP YV
Sbjct: 108 TPPYVPPYIPPPTPPYVPPPTPPSPPPYV 136
>01_01_1225 - 9894899-9895333
Length = 144
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 223 RVGRTRISIFWRPIWSWQYWK*SRLPIFWRLVWSWQHRR 339
R+ R R I WRP W+W R + R VW+W+ RR
Sbjct: 100 RIRRARARI-WRP-WAWGGG--GRSGMRRRRVWAWRRRR 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,677,946
Number of Sequences: 37544
Number of extensions: 429836
Number of successful extensions: 1566
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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