Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M14
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.1  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.1  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    30   2.1  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    29   4.9  
U46673-7|AAC48154.1|  811|Caenorhabditis elegans Beta-catenin/ar...    28   8.6  
AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF063646-1|AAC17424.1|  811|Caenorhabditis elegans beta-catenin/...    28   8.6  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 305 KMGSRDYFQYCHDQIGRQKMDIRV 234
           KM   DY +YC DQI R    ++V
Sbjct: 283 KMNCNDYMEYCEDQINRYSQLVKV 306


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 305 KMGSRDYFQYCHDQIGRQKMDIRV 234
           KM   DY +YC DQI R    ++V
Sbjct: 320 KMNCNDYMEYCEDQINRYSQLVKV 343


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/103 (25%), Positives = 36/103 (34%)
 Frame = +1

Query: 421  RTELSKNDPYHDTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSDLRLPGAKLWKQIRNA 600
            R E  K     D +      P  N I   P P N   ++P NP    LP  +L       
Sbjct: 1259 RQEPPKKPVADDHKSAIAPLPPANTIMPPPPPYNQASAVPLNPPRTALPPLQL------- 1311

Query: 601  FSRISAFESRRAGWNGLRA*PLHLQAETGRNLQVRREERQRGL 729
               +   +S    W  + A P  L   T R+ +   EE  R +
Sbjct: 1312 -PPLQPLQSESPSWASMSAPPTALIPRTPRSSEFADEEDTRAM 1353


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/83 (28%), Positives = 37/83 (44%)
 Frame = -1

Query: 427 LSS*RRVTVATTPCIAMTRHAS*RRVAVTTSCVAMTRQAARRWVAVTTSSIAMTR*AARR 248
           LSS    TV  TP +      S     VTT+ +  T  +      VTT+SI  T  + + 
Sbjct: 78  LSSTTASTVTPTPILTTVTTTS-TTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQL 136

Query: 247 WISVSARP*QSAVTRKSSGLWIR 179
             +V+  P  +  TRK++   +R
Sbjct: 137 PTTVTTTPIPTTTTRKTTTTTLR 159


>U46673-7|AAC48154.1|  811|Caenorhabditis elegans
           Beta-catenin/armadillo relatedprotein 1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 497 YNPP--HGPPMVYPVYH-GTPPTYV 562
           YN P  H PP +YP Y  G P TY+
Sbjct: 736 YNSPMYHSPPAMYPEYSIGPPETYL 760


>AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.10 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 485 QQIRYNPPHGPPMVYPVYH 541
           QQ+ Y+ P GPPMV P++H
Sbjct: 220 QQLAYSLPMGPPMV-PIHH 237


>AF063646-1|AAC17424.1|  811|Caenorhabditis elegans
           beta-catenin/armadillo homologBAR-1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 497 YNPP--HGPPMVYPVYH-GTPPTYV 562
           YN P  H PP +YP Y  G P TY+
Sbjct: 736 YNSPMYHSPPAMYPEYSIGPPETYL 760


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 485 QQIRYNPPHGPPMVYPVYHGTPPTYVY 565
           QQ  Y PP  PP  Y  Y    PT  Y
Sbjct: 370 QQQAYQPPVNPPTSYQAYQPPVPTSYY 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,648
Number of Sequences: 27780
Number of extensions: 360846
Number of successful extensions: 1255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)