Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M13
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    38   0.002
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    32   0.12 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   0.37 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   1.1  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   2.6  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   4.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   6.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   6.0  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    26   6.0  

>SPAC20G8.08c |fft1||fun thirty related protein
            Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +1

Query: 184  HLHQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFS---EVSDYIK-KLGSQNWDYIR 351
            HLH F L       S ++K+LC L+  S P E ++ FS   +V D ++  L + + +++R
Sbjct: 750  HLHPFALKGKPWMDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLR 809

Query: 352  KEPERLTEEMKHLTEQTQELAFTNYKTFV 438
             +     E  + L +        NYK F+
Sbjct: 810  LDGSTPVETRQQLIDDFH--TNENYKVFL 836


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = +1

Query: 334 NWD-YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFL 510
           N+D Y+R + E  T +MK   +Q +E+A  + K F+ +A     +++   +SKQ + + +
Sbjct: 302 NFDIYMRTKEENETNQMKAYLKQQEEIA--HIKKFIASAGTYANLVRQA-KSKQKIIDKM 358

Query: 511 DATPGFIEESE 543
           +A  G +E+ E
Sbjct: 359 EAA-GLVEKPE 368


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 367 LTEEMKHLTEQTQELAFTNYKT--FVETAEISRTIIKDLNRSKQSLQNFLDATPGFIE-E 537
           L+E+ K    +   L+F   +   F++  ++ RTI+ +    K  +QN L++  G ++  
Sbjct: 330 LSEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAH 389

Query: 538 SERFSQMAGTIVKEKSRYSTIRNQSDK 618
            E+F Q    I ++     ++R ++ K
Sbjct: 390 LEKFEQTERDISEKNEEVKSLREKAAK 416


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +1

Query: 304 SDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNR 483
           +++ ++L  Q  D   KE E LTE  K L EQTQ+      +  VE  E+ R  +K    
Sbjct: 498 NEFDRQLKEQEEDLQNKE-EELTELRKLLREQTQD--SQKLRLLVEQLELERQDLKQAGE 554

Query: 484 SKQS 495
           +  S
Sbjct: 555 NHYS 558


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 484 SKQSLQNFLDATPGFIEESERFSQMAGTI----VKEKSRYSTI 600
           ++ +L+NFLD  P   EE  R S+ A       +  +SRY++I
Sbjct: 354 TRNALENFLDNLPSPSEERSRISRSASEARKLGINAQSRYASI 396


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 29/130 (22%), Positives = 53/130 (40%)
 Frame = +1

Query: 100 LVFEINYFVRNCVKCKL*SVVPILNRRAHLHQFQLSSSSTEMSQELKELCQLIFPSSPTE 279
           L+F+ +Y  ++  K  L + +PI+N    LH     +S+  +  E ++ C L F     +
Sbjct: 9   LIFD-SYDFKHEGKVHLSNFLPIINDLQLLHP----ASAPPLLSEFQKQCTLEFVRQNAD 63

Query: 280 NVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISR 459
             I      D  KKL     D    + E+ + E ++     +E A  +      +   S 
Sbjct: 64  LSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQNSKNSIKEDANEHSVNSAHSKSSSN 123

Query: 460 TIIKDLNRSK 489
              + LN S+
Sbjct: 124 ASPESLNPSQ 133


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = +1

Query: 367 LTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNF--------LDATP 522
           ++++++    + Q+    NY++F+E +E    I  +L +  Q+   F        +D   
Sbjct: 33  VSQQIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLEKVLQNSYEFQSMVSLPKVDRVS 92

Query: 523 GFIEESERFSQMAG 564
            F+ ++E  SQ +G
Sbjct: 93  KFLSDNESISQTSG 106


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 422 FVNANSWVCSVKCFISSVSLSGSFRI 345
           FV  NS  C+V+   +S + +GSFRI
Sbjct: 826 FVAPNSGFCAVQSVANSFAKAGSFRI 851


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 173 TGERTYISFSYLHHQLKCL 229
           TG+RTYI +S +H+ L  L
Sbjct: 235 TGQRTYIVYSGIHYDLAAL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,671
Number of Sequences: 5004
Number of extensions: 59735
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)