Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M13
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782... 72 7e-13
07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599 33 0.22
01_03_0282 - 14580875-14580891,14582126-14585855 32 0.51
10_05_0044 - 8509121-8509191,8509270-8509350,8509452-8509565,850... 29 3.6
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 4.8
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 28 8.4
>12_02_0645 +
21475126-21475293,21475386-21475538,21478101-21478249,
21478449-21478526,21478604-21478697,21478920-21478994,
21479341-21479637,21479722-21479789,21479876-21479930,
21480137-21480275,21480439-21480623,21480748-21481119
Length = 610
Score = 71.7 bits (168), Expect = 7e-13
Identities = 44/174 (25%), Positives = 79/174 (45%)
Frame = +1
Query: 310 YIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSK 489
Y+ +L S + + + KEPE L + + + Q QE+A NY F+ +E + L
Sbjct: 42 YVSELLSFSIERLHKEPELLRVDAERVRRQMQEVAVENYGAFIAASEALSFVRAQLEGFD 101
Query: 490 QSLQNFLDATPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNA 669
+ L+ ++ P F + A I++E+ T+ P LM +
Sbjct: 102 RHLEALIEEIPNLTSGCTEFVESAQQILEERKLNQTLLANHSTLLDLLEIPQLMDTCIRN 161
Query: 670 EDYESALDIFTFVRNLSKRYSVIPIVQNTTNEIMTLWFETLYHLFNQLVMIYRS 831
+Y+ ALD+ FV +SK + +P++Q E+ +T+ L +QL+ RS
Sbjct: 162 GNYDEALDLEAFVSKISKLHPDLPVIQGLAVEVK----KTIQSLISQLLQKLRS 211
>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
Length = 243
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +1
Query: 349 RKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGF 528
R+E R+T+E+ LTEQ ++ A + E AE +T+ + NR S +DA
Sbjct: 47 RRETARVTDEIPRLTEQ-EKAASAQLEDDAEAAEKEKTLTETENRRAMSDAENIDAEIAA 105
Query: 529 IEESERFSQ 555
E+ R S+
Sbjct: 106 AEQRIRESE 114
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = +1
Query: 208 SSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKH 387
+S +++ + C + FP++P++ + + Y++KL ++ D + P+R + ++
Sbjct: 942 NSEASVTEMKLDGCNMFFPTTPSKPTVGLWKWCKYLQKLEIKSCDVLIHWPQREFQSLES 1001
Query: 388 LTEQTQE 408
L E T E
Sbjct: 1002 LNELTVE 1008
>10_05_0044 -
8509121-8509191,8509270-8509350,8509452-8509565,
8509652-8509702,8510031-8510115
Length = 133
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/102 (24%), Positives = 46/102 (45%)
Frame = +1
Query: 190 HQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERL 369
H+ L T+ ++KE +I + EN ++ +D I +L Q+ KEPE+
Sbjct: 9 HKVSLEIEGTKEKHKMKENAGIISNAESNENSNSMTQGTD-IHQL--QDIRGSLKEPEKD 65
Query: 370 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQS 495
E KH+ E++ + + T + + + +LN K S
Sbjct: 66 KTETKHIQERSSTITQNSGITATQIPQSPALLHDELNMLKLS 107
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.1 bits (62), Expect = 4.8
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Frame = +1
Query: 193 QFQLSSSSTE---MSQELK--ELCQLIFPSSPTENVIFFSEVSDYIKKLGSQ--NWDYIR 351
Q QLS S+ E M E+K E+ Q S + V +S ++ + G ++D++
Sbjct: 894 QQQLSDSNVERKKMENEVKRMEIEQKDCSSKVDKLVEKYSWIATEKQLFGKSGTDYDFVS 953
Query: 352 KEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFI 531
EP + EE+++L Q L K + E + DL K ++N I
Sbjct: 954 CEPHKAREELENLQAQQSSLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKTVI 1013
Query: 532 EE 537
EE
Sbjct: 1014 EE 1015
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 655 EALNAEDYESALDIFTFVRNLSKRYSVIPIVQNTTNEIMTLWFE 786
E L ++ +DIF + N + + + +N TNE + WF+
Sbjct: 55 ERLCKRNFRMEVDIFHALVNKLREKEYLTVAKNATNETLQDWFQ 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,494
Number of Sequences: 37544
Number of extensions: 306668
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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