Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M13
(863 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11365| Best HMM Match : Dor1 (HMM E-Value=0) 88 8e-18
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20) 35 0.074
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_53330| Best HMM Match : TSC22 (HMM E-Value=6.6) 31 0.92
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_50796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05) 29 6.5
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 29 6.5
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 28 8.5
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_11365| Best HMM Match : Dor1 (HMM E-Value=0)
Length = 587
Score = 88.2 bits (209), Expect = 8e-18
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Frame = +1
Query: 277 ENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEIS 456
++ + F + +K L +++ +EPERL EE + + EQTQ LAF NYKTF+ TAE S
Sbjct: 3 DDTVSFESDENLLKTLFRESFP--GREPERLAEEKEQVLEQTQNLAFHNYKTFIRTAECS 60
Query: 457 RTIIKDLNRSKQSLQNFLDATPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXX 636
+ I +D + +++ LD PGF + + F A I + + DK
Sbjct: 61 QEIFEDFVLVESHVESLLDKLPGFSTKCKEFMDTAREINQRYNIVHKGHGTIDKNSSSVL 120
Query: 637 XPSLMRE-ALNAEDYESALDIFTFVRNLSKRYSVIPIVQNTTNEI 768
L+ + + YE AL++ ++++ L K+ S IP++Q+ +
Sbjct: 121 DGKLLMDTCVRNNYYEEALELSSYIKRLEKKLSNIPVIQSIVQAV 165
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 804 QSARXDLPLPQCLQILGYLR 863
Q R + LP CL+++GYLR
Sbjct: 178 QQLRSSIQLPACLRVIGYLR 197
>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
Length = 1193
Score = 35.1 bits (77), Expect = 0.074
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +1
Query: 202 LSSSSTEMSQELKELCQLIFPSSPTENVIFFSEV----SDYIKKLGSQNWDYIRKEPERL 369
L+S+ T +Q KEL ++FPS E+ I+ +V +D+ K L S + P+RL
Sbjct: 666 LTSAETRYAQIEKELLAIVFPSEKFESYIYGRDVVHVETDH-KPLESIVLKPLCSAPQRL 724
Query: 370 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSK 489
+ L + EL + K +SR + ++N ++
Sbjct: 725 QRMLLRLQKYNLELQYKKGKEMFLADTLSRAYLPEVNATE 764
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +1
Query: 349 RKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGF 528
+++ E++ EM+ +TE+ + L K F E + ++L + S Q F
Sbjct: 768 KEDTEKVRHEMEGITEENETLR----KKFETQKEKIEGMSRELVEMQNSSQKVTAKMNSF 823
Query: 529 IEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNAE 672
+++ F + VKEK RY + S + +LM ++L E
Sbjct: 824 AAKAQSFEKQLEAAVKEKDRYKKELDTSLEKVQRNKEETLMAQSLVQE 871
>SB_53330| Best HMM Match : TSC22 (HMM E-Value=6.6)
Length = 97
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 646 LMREALNAEDYESALDIFTFVRNLSKRYSVIPIVQNTTNEI 768
LM + YE AL++ ++++ L K+ S IP++Q+ +
Sbjct: 1 LMDTCVRNNYYEEALELSSYIKRLEKKLSNIPVIQSIVQAV 41
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 804 QSARXDLPLPQCLQILGYLR 863
Q R + LP CL+++GYLR
Sbjct: 54 QQLRSSIQLPACLRVIGYLR 73
>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.1 bits (67), Expect = 1.2
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Frame = +1
Query: 139 KCKL*SVVPILNRRAHLHQFQLSSSSTEMSQELKELCQLIFPSSPTENVIFFSE---VSD 309
K KL V I H+ + S + S E +FF + + D
Sbjct: 198 KLKLEKVAEIKKINGHMMAIKRQKSDADGESLASSTYDTDEEFSDEEPELFFGDPQQLLD 257
Query: 310 YIKKLGSQNWDYIR--KEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNR 483
+L QN I+ +E E EEMK +QTQ+ +Y F AE ++ LN+
Sbjct: 258 IFAELEEQNLSLIQNSQETEEALEEMKQTIKQTQDRMMFSYGEF--KAEDQEKMLAALNK 315
Query: 484 SKQSL 498
+ +
Sbjct: 316 KVEEV 320
>SB_50796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 424 YKTFVETAEISRTIIKDLN---RSKQSLQNFLDATPGFIEESERFSQMAGTIVKEKSRYS 594
Y F E + +T++ D +S Q L++ D F+E +F +M+GT+ K + S
Sbjct: 3 YLNFGEIGQNIKTLMDDFQQHVKSNQKLESISDMK-NFVENYPQFKKMSGTVSKHVTMVS 61
Query: 595 TI 600
+
Sbjct: 62 EL 63
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 343 YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATP 522
YI ++ +L + + + QEL + YK FVE E S L Q+ NF ++ P
Sbjct: 465 YIEQQELQLQLQTRLAKAKAQELIYKEYKDFVEGGEHS------LRDKPQTPTNFPESVP 518
Query: 523 G 525
G
Sbjct: 519 G 519
>SB_51561| Best HMM Match : MHC_I_C (HMM E-Value=3.6e-05)
Length = 431
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 262 PSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQE 408
P+S TEN + +S KKL ++W+ I EP ++T + T QE
Sbjct: 17 PASDTENTLTSVPLSTRRKKLVRESWELI--EPVKITIGKRIFTSGEQE 63
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 343 YIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATP 522
YI ++ +L + + + QEL + YK FVE E S L Q+ NF ++ P
Sbjct: 171 YIEQQELQLQLQTRLAKAKAQELIYKEYKDFVEGGEHS------LRDKPQTPTNFPESVP 224
Query: 523 G 525
G
Sbjct: 225 G 225
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 28.7 bits (61), Expect = 6.5
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Frame = +1
Query: 193 QFQLSSSSTEMSQELKELCQLIFPSSPTEN-VIFFSEVSDYIKKLGSQNWDYIRKEPERL 369
Q + + + E+ Q L E QL + TE V+F +++ +Y KK+ +Y K +RL
Sbjct: 11 QVEFENQTKEIRQLLSE--QLKGYDARTEGKVLFLADLQEYCKKMSEVETEY-SKNLDRL 67
Query: 370 TEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFIEESERF 549
++ ++ Q+ + + +++ NR+KQ Q+F D I + RF
Sbjct: 68 SD---RFLDRLQKFKAQRKERSTTMDVWHKLLVETKNRAKQR-QSFSDNLANNI--ANRF 121
Query: 550 SQMAG---TIVKEKSR-YSTIRNQS 612
M+ I K+K R Y T+ +S
Sbjct: 122 MSMSDDYQRISKKKLRKYHTMFGES 146
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/94 (22%), Positives = 47/94 (50%)
Frame = +1
Query: 223 MSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQT 402
+SQ LKEL + + ENV+ +++ K S DY+RKE R+ ++ E+
Sbjct: 451 LSQSLKELNNRNYDA--LENVL--NDIEQ--KSSLSDAIDYLRKEIRRIKDDSNEFVERN 504
Query: 403 QELAFTNYKTFVETAEISRTIIKDLNRSKQSLQN 504
++ + E+ +++ ++ ++ K+ L++
Sbjct: 505 PKIEIQDKSN--ESKDLTSNLLNEVKTCKEMLES 536
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 376 EMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFIEESERFSQ 555
EM + +++EL+ + + + T I K + R L + ATP +SE+F +
Sbjct: 493 EMSRVQSESEELS-DDIGSDIRTPSIPLLQQKTVARPPTRLVSGKSATPSPESDSEKFDE 551
Query: 556 MAGTIVK-EKSRYSTIRNQSDKXXXXXXXP 642
GT+ E +++ +QS P
Sbjct: 552 FEGTVFDVEDAKFEASPSQSRAYASSARTP 581
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/94 (22%), Positives = 47/94 (50%)
Frame = +1
Query: 223 MSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQT 402
+SQ LKEL + + ENV+ +++ K S DY+RKE R+ ++ E+
Sbjct: 429 LSQSLKELNNRNYDA--LENVL--NDIEQ--KSSLSDAIDYLRKEIRRIKDDSNEFVERN 482
Query: 403 QELAFTNYKTFVETAEISRTIIKDLNRSKQSLQN 504
++ + E+ +++ ++ ++ K+ L++
Sbjct: 483 PKIEIQDKSN--ESKDLTSNLLNEVKTCKEMLES 514
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,876,277
Number of Sequences: 59808
Number of extensions: 392437
Number of successful extensions: 909
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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