Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M13
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical ... 43 3e-04
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 32 0.46
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 30 2.4
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.2
Z99280-5|CAB16501.2| 413|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 29 5.7
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 29 5.7
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 5.7
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 29 5.7
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 29 5.7
AF022975-9|AAB70669.1| 344|Caenorhabditis elegans Hypothetical ... 29 5.7
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 29 5.7
Z81088-9|CAB03126.1| 335|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 9.9
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 9.9
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 9.9
>AF038615-4|AAB94143.1| 743|Caenorhabditis elegans Hypothetical
protein R02D3.2 protein.
Length = 743
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 2/170 (1%)
Frame = +1
Query: 307 DYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRS 486
D I+ +G + +R++ L E+K + Q +LAF NY T+ + + K
Sbjct: 11 DDIRNMGLEE---MRRQKVLLASELKAIDAQISDLAFNNYGTYADAGRATHDCSKTFGEM 67
Query: 487 KQSLQNFLDATPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALN 666
+ N D F A + +E+ ++S+ PS M +
Sbjct: 68 RDKTVNLSDQAEELTSAFVEFRAKAKQLSEEQDLVRKALDKSNPIWELLTLPSRMDICIR 127
Query: 667 AEDYESALDIFTFVRNLSKRYSVI--PIVQNTTNEIMTLWFETLYHLFNQ 810
A Y+ A + + L ++ + P+++ + ++ L LFN+
Sbjct: 128 AGYYDLAYTLTNYGLQLQQQTQLYRNPLIKKVADHLVEARAYLLEELFNK 177
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 32.3 bits (70), Expect = 0.46
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Frame = +1
Query: 355 EPERLTEEMKHLTEQTQELAFTNYKTFVETA-EISRTIIKDLNRSKQSLQNFLDATPGFI 531
E E E+ K T++ ++L K E E + + KDL S + +D F
Sbjct: 191 ETENEEEDDKEKTDK-EKLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFD 249
Query: 532 EESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNAEDYESA 687
+E E +M I K+K R + D S+ E +A + A
Sbjct: 250 DEIEYLEEMLDNIEKQKDRKGSKDETEDTDATGDEEDSMFEEVKSASNKSGA 301
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 32.3 bits (70), Expect = 0.46
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Frame = +1
Query: 355 EPERLTEEMKHLTEQTQELAFTNYKTFVETA-EISRTIIKDLNRSKQSLQNFLDATPGFI 531
E E E+ K T++ ++L K E E + + KDL S + +D F
Sbjct: 191 ETENEEEDDKEKTDK-EKLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFD 249
Query: 532 EESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNAEDYESA 687
+E E +M I K+K R + D S+ E +A + A
Sbjct: 250 DEIEYLEEMLDNIEKQKDRKGSKDETEDTDATGDEEDSMFEEVKSASNKSGA 301
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 822 NHXELIEEMIQCFKP*XHYLICCILNNWYH 733
N+ +++ I CF P + +ICC LN YH
Sbjct: 235 NYTQIVSFFITCFIPYLYIMICCYLN--YH 262
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 358 PERLTEEMKHLTEQTQEL---AFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGF 528
P+ L M+ L ++++ + AF +K FV + I LNR+++ L FL
Sbjct: 266 PDNLRLMMELLRDKSRNIQYEAFHVFKVFVANPNKPKPISDILNRNREKLVEFLSEFHND 325
Query: 529 IEESERFSQMAGTIVKE 579
+ E+F+ ++K+
Sbjct: 326 RTDDEQFNDEKAYLIKQ 342
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +1
Query: 358 PERLTEEMKHLTEQTQEL---AFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGF 528
P+ L M+ L ++++ + AF +K FV + I LNR+++ L FL
Sbjct: 525 PDNLRLMMELLRDKSRNIQYEAFHVFKVFVANPNKPKPISDILNRNREKLVEFLSEFHND 584
Query: 529 IEESERFSQMAGTIVKE 579
+ E+F+ ++K+
Sbjct: 585 RTDDEQFNDEKAYLIKQ 601
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 292 FSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISR-TII 468
FSE ++ K S WD ++ + + L K + E+ QEL T+ + T SR +
Sbjct: 891 FSEQLKFVDKATSVQWDSVQTDMKELAAGFK-MAEKEQELKGTDCPEALSTFTASRKQKM 949
Query: 469 KDLNRSKQ-SLQNFLDATPGFIEESER 546
DL ++ Q + +F D F E+E+
Sbjct: 950 ADLEQAFQLAASSFKDCCE-FYGENEK 975
>Z99280-5|CAB16501.2| 413|Caenorhabditis elegans Hypothetical
protein Y57G11B.3 protein.
Length = 413
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 286 IFFSEVSDYIKKLGSQNWDYIRKEPERLTEEMKHLTEQTQELAFTNYK 429
I FS VSD +R+E +R+TE KH+ +T + F YK
Sbjct: 235 ILFSSVSDLNNPDAKIK---MRQEMDRITERQKHIFTETFPVIFKEYK 279
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/93 (26%), Positives = 44/93 (47%)
Frame = +1
Query: 340 DYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDAT 519
D R+E + L +E+K LT+Q E + AE+ + I++ L K+ LQ LD
Sbjct: 1509 DSTRRENKSLAQEVKDLTDQLGEGGRS-------VAELQK-IVRKLEVEKEELQKALDEA 1560
Query: 520 PGFIEESERFSQMAGTIVKEKSRYSTIRNQSDK 618
+E E +++ + S IR++ +K
Sbjct: 1561 EAALEAEE------AKVLRAQIEVSQIRSEIEK 1587
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 268 SLGKLIDRVPLVPETFQLMMKITETDVSALA 176
SLGKL+DR +V + F + +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 268 SLGKLIDRVPLVPETFQLMMKITETDVSALA 176
SLGKL+DR +V + F + +E D+ ALA
Sbjct: 749 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 779
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/93 (26%), Positives = 44/93 (47%)
Frame = +1
Query: 340 DYIRKEPERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDAT 519
D R+E + L +E+K LT+Q E + AE+ + I++ L K+ LQ LD
Sbjct: 1509 DSTRRENKSLAQEVKDLTDQLGEGGRS-------VAELQK-IVRKLEVEKEELQKALDEA 1560
Query: 520 PGFIEESERFSQMAGTIVKEKSRYSTIRNQSDK 618
+E E +++ + S IR++ +K
Sbjct: 1561 EAALEAEE------AKVLRAQIEVSQIRSEIEK 1587
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 268 SLGKLIDRVPLVPETFQLMMKITETDVSALA 176
SLGKL+DR +V + F + +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 268 SLGKLIDRVPLVPETFQLMMKITETDVSALA 176
SLGKL+DR +V + F + +E D+ ALA
Sbjct: 749 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 779
>AF022975-9|AAB70669.1| 344|Caenorhabditis elegans Hypothetical
protein K09C6.2 protein.
Length = 344
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/109 (22%), Positives = 39/109 (35%)
Frame = +1
Query: 361 ERLTEEMKHLTEQTQELAFTNYKTFVETAEISRTIIKDLNRSKQSLQNFLDATPGFIEES 540
E E+ K T++ + A + + E + + KDL S + +D F +E
Sbjct: 184 ENEEEDDKEKTDKEKLDAEEEKELAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEI 243
Query: 541 ERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNAEDYESA 687
E +M I K+K R D S+ E A + A
Sbjct: 244 EYLEEMLDKIDKQKDRKGPKDETEDTDATGDEEDSMFEEVKTASNKSGA 292
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 268 SLGKLIDRVPLVPETFQLMMKITETDVSALA 176
SLGKL+DR +V + F + +E D+ ALA
Sbjct: 731 SLGKLLDRFMVVRDDFCMYTYSSEEDICALA 761
>Z81088-9|CAB03126.1| 335|Caenorhabditis elegans Hypothetical
protein F53F1.9 protein.
Length = 335
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 640 PSLMREALNAEDYESALDIFTF-VRNLSKRYSVIPIVQNTTNEIMTLWFETLYHLFNQLV 816
P M+ + + ES LD TF V L Y + N+ M T Y +N L
Sbjct: 223 PRQMQSSQEKQKRESGLDKMTFIVCFLELVYFAFVVYSLQINQTMNK--RTFYFYYNILC 280
Query: 817 MIYRSLSAY 843
+IY ++SA+
Sbjct: 281 VIYSTVSAW 289
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.9
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Frame = +1
Query: 199 QLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEE 378
+L + S+E ++ +E ++ E ++ EVS ++ + Q E +LTE
Sbjct: 905 RLDAESSERAEIFEERSRMAARRDELEGIL--EEVSKRLE-IEEQKAKKADSESRKLTEM 961
Query: 379 MKHLTEQTQELAFTNYKTFVETAEISRTI---------IKD----LNRSKQSLQNFL-DA 516
++HL E ++ + K +E I + ++D L++ K++L+ D
Sbjct: 962 VRHLEENLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNKLSKEKKALEERCEDL 1021
Query: 517 TPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNA---EDYESA 687
+ I+E ER Q+ + ++ + I ++ +K R A E+ ES
Sbjct: 1022 SSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQLREEQESC 1081
Query: 688 LD 693
L+
Sbjct: 1082 LE 1083
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.9
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Frame = +1
Query: 199 QLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEE 378
+L + S+E ++ +E ++ E ++ EVS ++ + Q E +LTE
Sbjct: 905 RLDAESSERAEIFEERSRMAARRDELEGIL--EEVSKRLE-IEEQKAKKADSESRKLTEM 961
Query: 379 MKHLTEQTQELAFTNYKTFVETAEISRTI---------IKD----LNRSKQSLQNFL-DA 516
++HL E ++ + K +E I + ++D L++ K++L+ D
Sbjct: 962 VRHLEENLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNKLSKEKKALEERCEDL 1021
Query: 517 TPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNA---EDYESA 687
+ I+E ER Q+ + ++ + I ++ +K R A E+ ES
Sbjct: 1022 SSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQLREEQESC 1081
Query: 688 LD 693
L+
Sbjct: 1082 LE 1083
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.9
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Frame = +1
Query: 199 QLSSSSTEMSQELKELCQLIFPSSPTENVIFFSEVSDYIKKLGSQNWDYIRKEPERLTEE 378
+L + S+E ++ +E ++ E ++ EVS ++ + Q E +LTE
Sbjct: 905 RLDAESSERAEIFEERSRMAARRDELEGIL--EEVSKRLE-IEEQKAKKADSESRKLTEM 961
Query: 379 MKHLTEQTQELAFTNYKTFVETAEISRTI---------IKD----LNRSKQSLQNFL-DA 516
++HL E ++ + K +E I + ++D L++ K++L+ D
Sbjct: 962 VRHLEENLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNKLSKEKKALEERCEDL 1021
Query: 517 TPGFIEESERFSQMAGTIVKEKSRYSTIRNQSDKXXXXXXXPSLMREALNA---EDYESA 687
+ I+E ER Q+ + ++ + I ++ +K R A E+ ES
Sbjct: 1022 SSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQLREEQESC 1081
Query: 688 LD 693
L+
Sbjct: 1082 LE 1083
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,204
Number of Sequences: 27780
Number of extensions: 318170
Number of successful extensions: 851
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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