Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M10
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268     31   1.0  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   2.3  
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364...    28   5.4  
04_03_0288 + 13965327-13965687,13966182-13967431                       28   5.4  
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519...    28   7.1  

>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
          Length = 667

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = -1

Query: 488 KFVWNWNVCLRLALE---ALFHLHTDLS*LLRYRER*KTRNKHLDNNF 354
           +F  +W+ CLR+A E   AL++LH+  S  + +R+  K+ N  LD N+
Sbjct: 422 EFTLSWDQCLRIATEAAGALYYLHSAASVSVLHRDV-KSSNILLDANY 468


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = -1

Query: 485 FVWNWNVCLRLALE---ALFHLHTDLS*LLRYRER*KTRNKHLDNNF 354
           F  +W+ CLR+A+E   AL++LH+  S  + +R+  K+ N  LD N+
Sbjct: 615 FSLSWDDCLRIAVEAAGALYYLHSAASVSVFHRDV-KSSNILLDANY 660


>04_03_0594 -
           17733827-17735085,17735576-17735642,17736379-17736413,
           17736810-17737665
          Length = 738

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = -1

Query: 476 NWNVCLRLALE---ALFHLHTDLS*LLRYRER*KTRNKHLDNNF 354
           +W+ CLR+A E   AL++LH+  S  + +R+  K+ N  LD N+
Sbjct: 497 SWDDCLRIATEAAGALYYLHSAASVSVLHRDV-KSSNILLDANY 539


>04_03_0288 + 13965327-13965687,13966182-13967431
          Length = 536

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = -1

Query: 488 KFVWNWNVCLRLALE---ALFHLHTDLS*LLRYRER*KTRNKHLDNNF 354
           +F  +W+ CLR+A+E   AL +LH+  S  + +R+  K+ N  LD N+
Sbjct: 288 RFSLSWDDCLRIAVEAAGALCYLHSAASVSVFHRDV-KSSNILLDANY 334


>10_02_0091 -
           5190536-5191794,5191878-5192030,5192501-5193099,
           5193771-5193837,5194177-5195170
          Length = 1023

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 476 NWNVCLRLALE---ALFHLHTDLS*LLRYRER*KTRNKHLDNNF 354
           +W  CLR+A E   AL++LH+  S  + +R+  K+ N  LD N+
Sbjct: 776 SWGDCLRIAAEAAGALYYLHSAASISIFHRDV-KSSNILLDANY 818


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,249
Number of Sequences: 37544
Number of extensions: 222416
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)