Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M08
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0493 - 4297761-4298288 35 0.095
09_04_0350 + 16899076-16900164 34 0.13
04_04_0069 + 22506885-22508354 33 0.38
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 32 0.67
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 31 1.5
08_02_1615 + 28257275-28258428,28258523-28259144 31 1.5
03_05_0983 - 29402261-29402436,29402711-29402855,29402941-294030... 30 2.0
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 29 3.6
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 3.6
07_03_0600 + 19866757-19867218,19867920-19868429 29 4.7
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 29 4.7
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 29 6.2
04_04_1542 - 34264994-34265331,34266195-34267029 29 6.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 6.2
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 29 6.2
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 29 6.2
09_06_0258 + 21900685-21901927,21902571-21902710 28 8.3
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 28 8.3
02_05_0310 + 27769988-27770830 28 8.3
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455 28 8.3
>08_01_0493 - 4297761-4298288
Length = 175
Score = 34.7 bits (76), Expect = 0.095
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 557 IHHHHPSPNQPAVIINQPPPP 619
+HHHHPSP Q A+ PPPP
Sbjct: 98 MHHHHPSPPQHALSPAVPPPP 118
>09_04_0350 + 16899076-16900164
Length = 362
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 553 GGPLRRITATIAVKARNAATATGSTRD--IATHSLEMINGFSSVRWRLRITWISWLLVWR 380
GG RR AT AV R AA A +TR +A + WRL +T +SW V
Sbjct: 102 GGRSRRSGAT-AVAGRWAAVAGSATRRPWLAGNGKAATAEIVPASWRL-VTGLSWAAVVL 159
Query: 379 VTGIASVWWWR 347
V + + WW++
Sbjct: 160 VVVVTASWWFK 170
>04_04_0069 + 22506885-22508354
Length = 489
Score = 32.7 bits (71), Expect = 0.38
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -2
Query: 553 GGPLRRITATIAVKARNAATATGSTRD--IATHSLEMINGFSSVRWRLRITWISWLLVWR 380
GG RR AT AV R AA A +TR +A WRL + +SW V
Sbjct: 113 GGRSRRSGAT-AVAGRRAAVAGSATRRPWLAGDGEAATAEIVPASWRL-VAGLSWAAVVL 170
Query: 379 VTGIASVWWWR 347
V + + WW++
Sbjct: 171 VVVVTASWWFK 181
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 533 DPPQRTTVIHHHHPSPNQPAVIINQPPPPY 622
+P T ++HH+P P PA + P PY
Sbjct: 62 EPEPEPTPVNHHYPPPTTPAYSLPPPAQPY 91
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 30.7 bits (66), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 149 FSFDCGDCDLCVNPCCLALS 208
FSF C C ++PCC A+S
Sbjct: 136 FSFRCTSCSFAMHPCCAAMS 155
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = +2
Query: 533 DPPQRTTVIHHH-----HPSPNQPAVIINQPPPP 619
D P + ++HHH HP P+ PA PP P
Sbjct: 31 DQPPHSHLLHHHHSPQSHPQPDAPAAAAPPPPAP 64
>03_05_0983 -
29402261-29402436,29402711-29402855,29402941-29403063,
29403280-29403579
Length = 247
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 560 HHHHPSPNQPAVIINQPPPP 619
HHHHP + + I+ PPPP
Sbjct: 24 HHHHPWGSSLSAIVAPPPPP 43
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 530 GDPPQRTTVIHHHHPSPNQPAVIINQPPP 616
G PQ T+ + P PNQP + NQPPP
Sbjct: 252 GGNPQ-TSFLTGQPPLPNQPPPLPNQPPP 279
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +2
Query: 560 HHHHPSPNQPAVIIN---QPPPP 619
HHHHP P P +++ PPPP
Sbjct: 107 HHHHPPPPPPPHLLHYYGHPPPP 129
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 536 PPQRTTVIHHHHPSPNQPAVIINQPPPP 619
PP H P P QP + QPPPP
Sbjct: 50 PPHYYQAGPPHAPPPQQPPAMWGQPPPP 77
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 542 QRTTVIHHHHPSPNQPAVIINQPPPP 619
+R T +H P P PA+II++ PPP
Sbjct: 17 RRRTALHRR-PPPLPPAIIIHKDPPP 41
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 506 ECSNSNRVDTRYCNPFFRNDQWLFIG-TMAVEDNLDILVAGVEGNRDSLRLVVEGRDI 336
EC NS+ +DT C + + Q F G M VE + IL+ + ++L G +
Sbjct: 381 ECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL 438
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 560 HHHHPSPNQPAVIINQPPP 616
HHHHP P QP Q PP
Sbjct: 249 HHHHPPPPQPPPSSLQLPP 267
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 536 PPQRTTVIHHHHPSPNQPAVIINQPPP 616
PP + P P QPAV + PPP
Sbjct: 82 PPPAAPAVTPARPPPQQPAVAVAAPPP 108
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 553 GGPLRRITATIAVKARNAATATGSTRDIATHSLE 452
GGP RR+T +A+ + TA G+ I+ LE
Sbjct: 66 GGPRRRLTPLLALSTLSLVTAAGTIYHISAWDLE 99
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 128 NRRMGLCFSFDCGDCDLCVNPCCLAL-SACCLIPCLCPNA-CG 250
+++ + D DC +C P + AC PC CP++ CG
Sbjct: 35 DKKQVVTIGMDVLDCPVCFEPFKPPIFQACSYEPCFCPDSGCG 77
>09_06_0258 + 21900685-21901927,21902571-21902710
Length = 460
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = +3
Query: 342 PTLHHQTEAIPVTLHTSNQDIQVILNRHRTDEKPLIISKEWVAISRVDPVAVAAFRAFTA 521
PT+ A+P T Q + V+ + +DEK +++S + +A R+D AV+ + A
Sbjct: 337 PTMAKLHVALPTLSLTDAQVVYVMGKVNESDEKAVLLSID-MANRRLD--AVSVYDA--- 390
Query: 522 IVAVILRSGPP*YTITTLHRINQPLSSTNHHL 617
A IL YT +T+ R + P S N +L
Sbjct: 391 --ARILHYFDVCYTQSTIFRYSAPSSGLNGNL 420
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 ILKYFITVIKPNNRRMGLCF-SFDCGDCDLCVNPCC-LALSACCLIPCL 232
I YF+ +++ N + + F +FD CV C + ++ CC +PC+
Sbjct: 226 ITDYFM-IVQSNVHMLSVVFLAFDVFFAVFCVAMACFIGIALCCCLPCV 273
>02_05_0310 + 27769988-27770830
Length = 280
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 551 TVIHHHHPSPN---QPAVIINQPPPP 619
+++HHHHP P+ +P +PP P
Sbjct: 239 SLVHHHHPPPSSRREPVAPAARPPAP 264
>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
Length = 249
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 569 GDGVSRWSAAEDHRNNRSKGTECSNSNRVDTRYCNPFFRNDQ 444
GDG S W+A D ++ ++K C+++ + C P R Q
Sbjct: 142 GDGDSEWAAHVDQQHKQAKAMPCTSACHFSSTRC-PIARGMQ 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,531
Number of Sequences: 37544
Number of extensions: 461011
Number of successful extensions: 1665
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -