Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_M08
(854 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 31 1.6
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 29 3.6
SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5) 29 6.4
SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5) 29 6.4
SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6) 29 6.4
SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 28 8.4
SB_45619| Best HMM Match : M (HMM E-Value=0.01) 28 8.4
SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 536 PPQRTTVIHHHHPSPNQPAVIINQPP 613
P +IHHHHPS + +II+ P
Sbjct: 158 PSSSIIIIHHHHPSSSSIIIIIHHHP 183
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +2
Query: 164 GDCDLCVNPCCLA--LSACCLI----PCLCPNACG 250
GDCD+C + C + S C + C CP++CG
Sbjct: 260 GDCDVCKDVSCTSPPFSTCVALNGRPACSCPSSCG 294
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 533 DPPQRTTVIHHHHPSPNQPAVIINQPPPP 619
D Q T+ H H PSP P+ IN+ PP
Sbjct: 281 DSTQTTSSKHQHQPSPPPPSSTINKYFPP 309
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 143 LCFSFDCGDCDLCVNPCCLALSACCLIPC 229
LC + C CV PCC+ L CC + C
Sbjct: 340 LCRAVSCRVVLCCVVPCCVVL--CCAVSC 366
>SB_41643| Best HMM Match : uDENN (HMM E-Value=3.5)
Length = 426
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 396 QDIQVILNRHRTDEKPLIISKEWVAISRVDPVAVAAF 506
+D+ L+ +TDEK LI+SK +A+ R+D V F
Sbjct: 254 RDVVDYLSTSKTDEKELIVSK--LAMERIDGVRARLF 288
>SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)
Length = 202
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 161 CGDCDLCVNPCCLALSACCLIPCLCPN 241
C D DLC +PC + C CPN
Sbjct: 102 CRDLDLCRDPCIVPAEGNKPASCQCPN 128
>SB_31583| Best HMM Match : Granulin (HMM E-Value=7.6)
Length = 169
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 396 QDIQVILNRHRTDEKPLIISKEWVAISRVDPVAVAAF 506
+D+ L+ +TDEK LI+SK +A+ R+D V F
Sbjct: 31 RDVVDYLSTSKTDEKELIVSK--LAMERIDGVRARLF 65
>SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 428 TMAVEDNLDILVAGVEGNRDSLRLVVEGRDIRVEEAAARLSLEDGARGWS 279
T+AV+ + L + GNR S R+ EEAAA + + R WS
Sbjct: 22 TLAVDTEMSDLTSAGPGNRSSSRVRFSDAVSEEEEAAAAVPNKKKTRYWS 71
>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -2
Query: 529 ATIAVKARNAATATGSTRDIATHSLEMINGFSSVRWRLRITWISWLLVWRVTGIASVWWW 350
AT AV+ A TRD +I GF RW +T SW+ ++ ++ W +
Sbjct: 172 ATPAVRPAKCAVTLRDTRD------SVIGGFG--RW---LTSYSWMSLYSMSSCKEKWEF 220
Query: 349 RVGISGLRRLLLDYHWRMV 293
+ GL+ D W V
Sbjct: 221 FSQVKGLKETRADKWWSNV 239
>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 711 YWFSYKKYYHYAF---QFIRL*CEGR--DRRNKIHFNTKVIYLHYLVTL 842
++F Y+ Y YAF + + C GR DR+N + N + Y +TL
Sbjct: 113 FYFGYESYMRYAFPHDELDPIHCTGRGPDRKNPTNININDVLGDYSLTL 161
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 170 CDLCVNPCCLALSACCLI---PCLCPNAC 247
C + + PCC+ L +CC++ C C AC
Sbjct: 10 CCVLLMPCCVLLMSCCVMLMWYCSCRVAC 38
>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
Length = 1315
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 518 SKGTECSNSNRVDTRYCNPFFRNDQWLFIGTMAVEDNLDILVAGVEGNRDSLRLVVEGRD 339
+K T+ SNSN + Y N + + + V D+ + ++ N D++R++ D
Sbjct: 1130 TKATKVSNSNEIREMYSNSDEMREMYSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSD 1189
Query: 338 -IRVEEA 321
IRV ++
Sbjct: 1190 EIRVMDS 1196
>SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 560 HHHHPSPNQPAVIINQPPPP 619
HHHH +QP + I PP P
Sbjct: 57 HHHHHHHHQPTITIIIPPSP 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,776,756
Number of Sequences: 59808
Number of extensions: 534088
Number of successful extensions: 1932
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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