Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M03
         (365 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   5.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   6.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   9.1  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 302 LLGENGNGSDRRHRPA 255
           L G   +GS R H+PA
Sbjct: 238 LAGLQSSGSSRSHQPA 253


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 271 RSEPFPFSPSNWLV 312
           R++ F F+P  WL+
Sbjct: 293 RADSFNFNPHKWLL 306


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 2   SEPTXSQPTASQPTVLAPAAP 64
           +EP   +P   +  V  PAAP
Sbjct: 327 NEPKRPRPNIDRHEVTRPAAP 347


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,180
Number of Sequences: 336
Number of extensions: 562
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)