Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_M03
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0633 + 18208116-18208732,18209916-18210129                       29   1.5  
05_05_0264 + 23675171-23676541                                         28   2.0  
11_06_0664 + 26048249-26048764,26048916-26050142                       28   2.6  
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706...    27   3.4  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    27   3.4  
06_02_0155 + 12380452-12381012                                         27   4.5  
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    27   4.5  
09_04_0507 + 18194320-18195081                                         27   6.0  

>04_03_0633 + 18208116-18208732,18209916-18210129
          Length = 276

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 89  GAAIDAHVEASDHVRAXADAXREQHDQAAEIHGXAVNAAVDHSWQAVXAVKTVEAKLDGA 268
           GA +DA   A   VR   DA R   +  A +HG A  AA+D + +   A +T+ + + G 
Sbjct: 49  GAGVDAVDRARRLVRTRHDAARLASEARAVLHGGA--AALDLARRWAGAGETLISSILGG 106

Query: 269 AG 274
            G
Sbjct: 107 GG 108


>05_05_0264 + 23675171-23676541
          Length = 456

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +2

Query: 17  SQPTASQPTVLAPAAPTISAGDIHGAAIDAHVEASDHVRAXADAXREQHDQAAEIHGXAV 196
           +QP+   P  LAPA  + SA     + +DA   A D +   A+A R  H++   +     
Sbjct: 18  AQPSPPPPPRLAPAPASASA-----SPMDAAAPARDFM---AEALRLVHNRLTCLVDRRT 69

Query: 197 NAAVDHSWQAVXAVKTVE 250
            A V H W+A  AVK ++
Sbjct: 70  MARVCHDWRA--AVKPLQ 85


>11_06_0664 + 26048249-26048764,26048916-26050142
          Length = 580

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 143 DAXREQHDQAAEIHGXAVNAAVDHSWQAVXAVKTVEAKLD 262
           DA RE H+  A   G A    +  +W+     + V++K+D
Sbjct: 76  DALREAHELVASCQGRAAAYRLVMAWRQAERFREVQSKID 115


>12_01_0774 +
           7063465-7064011,7065183-7065791,7067905-7068464,
           7069411-7069530
          Length = 611

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 8   PTXSQPTASQPTVLAPAAPTISAGDIHGAAIDAHVEASDHVRAXADA 148
           P    P A   T  A A P  +  D+   A  AHV A DH  A  DA
Sbjct: 37  PAADSPVADAATGGAAAEP-YARHDVDPPAAFAHVHALDHPAASIDA 82


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 101 DAHVEASDHVRAXADAXREQHDQAAEIHGXAVNAAVDH-SWQA 226
           DAH  +   VRA A     +  +   IH  AV A + H SW A
Sbjct: 297 DAHAASDAAVRAVAAICASEPARGGAIHHGAVGALLGHLSWAA 339


>06_02_0155 + 12380452-12381012
          Length = 186

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  PAAPTISAGDIHGAAIDAHVEASDH 127
           PAA   +A D+HG A + H    DH
Sbjct: 148 PAAAAAAANDVHGDADEQHPGYGDH 172


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 32  SQPTVLAPAAPTISAGDIHGAAID 103
           SQP +L   AP    GDIHG  +D
Sbjct: 46  SQPNLLRIHAPVKICGDIHGQFVD 69


>09_04_0507 + 18194320-18195081
          Length = 253

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 2   SEPTXSQ-PTASQPTV--LAPAAPTISAGDIHGAAIDAHVEASDHVRAXADAXR 154
           +EP   + PTA   T   ++PAA T+S G   G    A  E  D   A A   R
Sbjct: 182 AEPASGEAPTAEAATAADVSPAAVTVSEGPAEGPGPSAADEEEDESGASATTQR 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,547
Number of Sequences: 37544
Number of extensions: 103685
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)